Cobetia sp. AM6: CLAM6_04800
Help
Entry
CLAM6_04800 CDS
T08724
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAM6_04800 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobe03019
]
CLAM6_04800 (deaD)
03009 Ribosome biogenesis [BR:
cobe03009
]
CLAM6_04800 (deaD)
Enzymes [BR:
cobe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLAM6_04800 (deaD)
Messenger RNA biogenesis [BR:
cobe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLAM6_04800 (deaD)
Ribosome biogenesis [BR:
cobe03009
]
Prokaryotic type
rRNA helicases
CLAM6_04800 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBO55169
UniProt:
A0A5K7Y6D9
LinkDB
All DBs
Position
557523..559229
Genome browser
AA seq
568 aa
AA seq
DB search
MTTTSVVDRFSDLALLPAVLTSLEKLGYETPSPIQAQTIPSLLEGRDMIGQAQTGTGKTA
AFALPLLTRLDLDRREPQVLVLAPTRELAQQVAVNFTRYGQFMRGLEVATLCGGQDYREQ
MRSLKSGAQIVVGTPGRVIDHLDRKSLNLNGLKALVLDEADEMLRMGFIDDVKRVVADTP
KEAQRVFFSATLPTEIERIVNRYLVDPVKVAIKSESRTASTIEQMMVRVEGGAKLEALSR
LLEVETVDAAIVFVRTRAACTTVVEQLIARGISAAALSGDLDQSLRERTVTRLKRGKVDV
LVATDVAARGLDVARITHVFNYDLPGDSESFVHRTGRTGRAGREGRAITFVSGREMRKVR
WMEQALGQRITERQLPSEEEIRGHRDAAFRARVVEALGSSSNGHRALVQSLVEEGHDPVE
LAAVFVKMARAEETPIQSLPKPGARRNERSERGERTERPERGERRNSAPVAREGMKLYRV
AVGHRDGVKPGQLVGALANEGGIEGSRIGRIDIRNTHSVVELPSGLPTSIVSKMARARVA
GRPLELAEDGAGARPQRREGGNDDRRRA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacttccgtcgtcgatcgcttcagcgatcttgccctgctgcctgccgtcctg
acctctctcgagaagctgggctacgaaactccgtccccgatccaggctcagaccatcccg
agtctgctcgaaggccgtgacatgatcggccaggcacagacgggtaccggcaagaccgct
gcctttgcactcccgctgttgacccgtctggacctcgaccgccgtgaaccgcaggttctc
gtgctggccccgacccgtgagctggcccaacaggtcgccgtcaacttcacacgttacggt
cagttcatgcgtggcctggaagtggccactctctgcggtggtcaggactaccgcgagcag
atgcgtagcctcaagagcggcgcgcagatcgtcgtcggcaccccgggtcgtgtcatcgac
cacctggaccgcaagagcctgaacctgaacggcctgaaagccctcgtgctggatgaagcc
gatgagatgctgcgcatgggcttcatcgatgacgtcaagcgcgtcgtcgccgataccccg
aaggaagcgcagcgcgtcttcttctccgcgacgctgccgaccgagatcgagcgtatcgtc
aaccgctacctggttgatccggtcaaggttgccatcaagtccgaatcgcgtaccgcttcc
accatcgaacagatgatggtgcgtgtcgaaggcggcgctaagctcgaagcgctgtcccgt
ctgctggaagtcgagaccgtcgatgcggccatcgtcttcgtgcgtactcgtgccgcctgt
accacagtcgtcgaacagctgatcgctcgcggtatctccgcggcagcgctgtccggtgat
ctggaccagtccctgcgcgagcgcaccgtgactcgcctgaagcgtggcaaggtcgacgtg
ctggtcgcgaccgacgtcgccgctcgtggtctggacgtggcgcgtatcacccacgtcttc
aactacgacctgccgggtgacagcgaatccttcgtccaccgtactggccgtactggccgt
gccggtcgtgaaggtcgcgccatcaccttcgtcagcggtcgcgaaatgcgcaaggttcgc
tggatggagcaggccctgggccagcgcatcaccgaacgccagctgccgagcgaagaagag
atccgtggccaccgtgacgccgccttccgtgctcgcgtcgtcgaagccctgggcagcagc
tccaacggtcaccgcgctctggtccagagcctggtcgaagaaggtcacgatccggtcgag
ctggccgctgtcttcgtcaagatggctcgcgccgaagagacgccgatccagtctctgccg
aagccgggtgcgcgtcgcaacgagcgttccgagcgcggtgagcgcaccgagcgtccggaa
cgcggtgagcgtcgcaactccgcgccggtcgcacgtgaaggcatgaagctctaccgtgtg
gccgtcggccaccgtgatggcgtcaagccgggccagctggttggcgctctcgccaacgaa
ggcggcatcgaaggttcacgcatcggtcgcatcgacatccgcaacacgcacagtgtcgtg
gaactgccgagcggtctgccgaccagcatcgtgtccaagatggcgcgtgctcgcgtcgct
ggccgcccgctggaactggcagaagacggtgcgggcgctcgtccgcagcgccgtgaaggt
ggcaacgatgaccgtcgtcgcgcctga
DBGET
integrated database retrieval system
