Cobetia sp. AM6: CLAM6_04880
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Entry
CLAM6_04880 CDS
T08724
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CLAM6_04880 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_04880 (recB)
Enzymes [BR:
cobe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CLAM6_04880 (recB)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLAM6_04880 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BBO55177
UniProt:
A0A5K7Y3M8
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All DBs
Position
572817..577079
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AA seq
1420 aa
AA seq
DB search
MSDTEVEDMRGVESGVRSGIAQDKEAAMCDEMDQSQQGQALDIPTLPLLGQHLIEASAGT
GKTFTLAALYVRLVLGPLPGQDAGVCYPRPLTPPEILVVTFTEAATAELRDRIRARLKQA
REALLERASPDPVLAELLAPLLTSSPAEDAARLKAAAARRLDQAARLMDDAAIFTIHGFC
QRMLSRHAFDAGGRFGAELLQDGQSLLARCVEDYWRCEFYPLAREWQALIRGRWAGPDAL
GEELRGLLRDGTPRPLYRDGECLEAPHDLSELLGNAEQWRQQQEAARRAVEESFDEAAIR
AVMGEAFASKALNGNSYKEAELEPRLAATAAWLASGEHDFAADMLDSKKLCWLSQAKLEK
GTKKNCQTPRHPFFAALDMLAEVPAPDAVLLDQVAVHARDSVARALICEKRRLGLWEFSD
LLNDLDHALDPTLNGEASQRLARQIRQELPVAMIDEFQDTDPVQYRIFRRIYPQTAGDGP
SDYDAIGNDAVNGNAGEAPSTLLMIGDPKQAIYAFRGADIDTYLAARKVTSSRFTLPRNF
RSSAAMVSAVNALFAQHQAPFGSEDIPFQPVEAQGTRTRLVLRHPDGREEAACALNLWWA
SGERLSADDHRRAMSGACRAQIQALLEGQQRLAAGEPGLVFMDEGDATPRGVAASDIAVL
VRNGREAAAVRGALAEGGIRSVYLSEKSSVFDTPEAFELLQLFEAVAHPRDDRRLRAALA
TRLLAEDLSLVERLAVDELAWEREVERFDGYHRDWQRRGVLPMLRGVMRDFRVGERLAAR
AGGERALTDVLHLGELAQNAAQRLDGEQALLRWWHQALESGHEALDSDSLSQRLESDEGL
VRVVTIHKSKGLEYPIVLLPFMASFRAAEPDRNFGLLTLKQRWLATADVEGDDEGGADEE
DDNEEVPAHRVDQEDDALDDSILVKKPSREAIAAADHARLMEDVRLLYVALTRPKFACWL
GLAPIGKGGFSKQLSLPSTAVGYLLGLSDTPDIEASAIEAALHGWCDQQSAGLARVSGLP
APVGHEYQPPAERDQHFHGARHFAGGIEDDWWIASYTALLTDARQVTAALEDTADAADDR
VPEGATEIALEEGEQGLTRPDREVAGQSGPLLAGGLPMTVGEIHLHDFPRGPRPGTFLHG
LLEAVDLDRLGADDYRGELERLVGSRLHFGGFDASWQPRLTDWLEQALTRPLQGFEGEPI
LLNRLEAWLPELEFWLPAVHARSLPLDAVVTALEPLPRSRPRLAPRRMHGMLKGFIDLTF
QSGGRWYVLDWKSNYLGERPEDYLGESLARAMVEHRYDLQYVLYTLALHRLLKARLGDDY
DYERCMGGVLYVFLRGLDAGGDSPALAVDETEATPGRPLEGTATLGVATPGVFQRRPSQA
LIEALDLWLGGDSSALDSLLLNTTDTSPLTQSGQQGAFDV
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccgaagtggaagacatgcgcggtgtggagagtggcgtgaggagtggcatc
gctcaggacaaggaagcggcaatgtgtgacgagatggatcagagccagcagggccaggcc
ctcgatattccgacgctgccgctgctcggtcagcatctgatcgaggcgagtgccggcacc
ggcaagaccttcaccctcgccgcgctctacgtgcggctggtgctcgggcccttgcctggc
caggacgcgggcgtctgctatccgcgcccgctgacgccgccggagattctggtggtgacc
ttcaccgaagccgccactgctgagctgcgtgaccgtattcgggcacgcctcaagcaggcg
cgtgaggcgctgctggagcgtgccagtcctgatccggtgctggccgagttgctcgcgccg
ctgctgacatcatcacctgccgaggacgcagcgcgcctcaaggccgccgcggcacgacgt
ctcgatcaggcagcgcgcctgatggatgacgccgccatcttcaccatccacggcttctgc
cagcgcatgctcagccggcatgccttcgatgccggcggacgcttcggcgccgagctgttg
caggatggccagtcgctgctggcgcgctgcgtcgaggattactggcgctgcgagttctat
ccgctggcccgcgagtggcaggccttgatccgtgggcgctgggccggccccgacgcgctg
ggagaagagctgcgcggcctgctgcgggatggcacgccacgcccgctgtaccgcgacggc
gaatgtcttgaggccccgcatgacctgagcgagctgctcggcaatgccgaacagtggcgt
cagcagcaggaggccgcccggcgcgccgtcgaggaaagcttcgatgaggcggccatccgc
gcggtgatgggtgaggccttcgccagcaaggcgctcaacggcaacagctacaaggaggcc
gagctcgagccccgcctggcggcgacggccgcctggcttgccagcggcgagcacgacttc
gccgccgacatgctcgacagcaagaagctgtgctggctgagtcaggccaagctcgagaag
ggcaccaagaagaactgccagacgccgcgccatcccttcttcgcggcgctggacatgctg
gccgaggtgcccgccccggacgccgtgctgctggatcaggtcgccgtgcacgcgcgtgac
agcgtcgcccgcgccctgatctgcgagaagcgccgcctcgggctgtgggaattctcggac
ctgctcaatgatctcgatcacgcattggacccgacgctcaatggcgaggccagccagcgt
ctggcgcgccagatccgtcaggagctgccggtggcgatgatcgacgaattccaggatacc
gacccggtccagtaccgcatcttccggcgcatctatccgcagacggcgggcgatggcccg
tccgactacgatgccatcggcaacgatgccgtcaatggcaatgctggcgaggcgcccagc
acgctgttgatgatcggtgaccccaagcaggccatctatgccttccgcggcgccgatatc
gacacctatctggcggcgcgcaaggtcaccagctcgcgcttcaccctgccacgcaacttc
cgctccagcgccgcgatggtatccgcggtgaatgccctgttcgcccagcatcaggcgccc
ttcggcagtgaggacatccccttccagccagtcgaggcccagggcacgcgcacccggctg
gtgctgcgtcatccggatggccgcgaagaggccgcctgcgcgctgaatctgtggtgggcc
agcggtgagcgtctgagcgccgatgaccaccgccgtgccatgagtggtgcctgtcgcgcc
cagatccaggccttgctggaaggacagcagcgtctggcggcgggcgagccggggctggta
ttcatggatgaaggggatgcgacgccacgtggcgtggccgccagcgatatcgccgtgctg
gtgcgcaatggccgcgaggccgcagcggtgcggggcgcgctggccgaaggcggcatccgc
agcgtctatctgagcgagaagagctcggtattcgacacgccggaggccttcgagctgctg
cagctgttcgaggccgtggcccatccgcgtgatgaccgccgcctgcgcgcggcgctggcg
acgcggctgctggccgaggatctctcgctggtcgaacgcctcgcggtggatgagctggcc
tgggagcgtgaggtcgagcgcttcgatggctatcaccgcgactggcagcggcgcggcgtg
ctgccgatgctgcgcggcgtgatgcgcgacttccgggtcggtgagcggttggcggcgcgc
gccgggggcgagcgtgccctgaccgacgtgctgcaccttggcgagctggcccagaatgcc
gcccagcgcctcgatggcgagcaggcgttgctgcgctggtggcatcaggcgctggaatcc
ggccatgaggcgctggatagtgacagcctcagtcagcgactggaaagtgatgaggggctg
gtgcgcgtcgtcaccatccacaagtccaaggggcttgagtatcccatcgtgctgctgccg
ttcatggccagcttccgcgcggccgagccggacaggaatttcggcctgctgaccctcaag
cagcgctggctggccacggctgacgtggaaggtgatgacgagggaggcgctgacgaggaa
gacgataacgaggaagtgcctgctcacagagtcgatcaggaggatgacgctctcgatgac
agcatcctggtcaagaagccctccagggaggccatcgcggcggccgaccatgcacgcctg
atggaagatgtgcgtctgctctacgtggcgctgacgcgtcccaagttcgcctgctggctg
gggctggcgcctatcggcaagggcggtttcagcaagcagctgagcctgccgtccaccgcc
gtcggctacctgcttggcctgagtgataccccggatatcgaggccagcgccatcgaggcc
gcgctgcacggctggtgtgatcagcagtctgccggactggcgcgcgtttccggcctgccc
gcaccagtaggccacgaatatcagcccccggcggagcgcgatcagcacttccacggcgcg
cgccacttcgcgggcggcattgaggatgactggtggatcgcctcctacaccgccttgctc
accgatgcccgtcaggtgacggcggcgctggaagacaccgccgatgccgcggatgaccgc
gtgcccgagggcgccaccgagatcgcgctggaagagggcgagcagggcctgacgcgcccg
gaccgcgaggtggcggggcagtccggcccgctgctggccggtggcctgccgatgacggtg
ggcgagatccatctgcatgatttcccgcgcggaccgcgcccggggaccttcctgcatggt
ctgctggaggcggtggatctcgatcgcctcggcgcggatgactatcgcggcgagcttgaa
cggctggtgggctcacggctgcatttcggtggcttcgatgccagttggcagccgcgtctc
accgactggctggagcaggcgctgacccgcccgctgcaaggcttcgagggcgagcctatc
ctgctcaaccggctggaggcctggctgccggagctggaattctggctgccggccgtgcat
gcacgcagtctgccgctggatgccgtggtcaccgcgctggaaccgttgccgcgctcgcgg
cccaggctcgcgccacgccgcatgcacggcatgctcaagggcttcatcgatctgaccttc
cagtccggcgggcgctggtacgtgctggactggaaatccaactatctgggcgagcgcccc
gaggattatcttggcgagtcactggcccgcgccatggtcgagcaccgctacgacctgcaa
tacgtgctctacaccctcgcgctgcatcgcctgctcaaggcgcgcctcggcgacgactac
gattacgagcgctgcatgggcggggtgctgtatgtcttcctgcgcggcctggatgccggc
ggtgattcacccgcgcttgcggtggatgagactgaagcgacgcccggccggccccttgaa
ggtacagcgacgcttggcgtggcgacgcccggcgtcttccagcgccggccatcacaggcg
ctgatcgaggcgctggatctctggctgggcggcgacagctccgcattggacagcctgctc
ctcaacaccaccgacacctcgccactcacgcaaagcggccagcagggggccttcgatgtc
tga
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