Cobetia sp. AM6: CLAM6_06000
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Entry
CLAM6_06000 CDS
T08724
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe00071
Fatty acid degradation
cobe00280
Valine, leucine and isoleucine degradation
cobe00310
Lysine degradation
cobe00362
Benzoate degradation
cobe00380
Tryptophan metabolism
cobe00410
beta-Alanine metabolism
cobe00640
Propanoate metabolism
cobe00650
Butanoate metabolism
cobe00907
Pinene, camphor and geraniol degradation
cobe00930
Caprolactam degradation
cobe01100
Metabolic pathways
cobe01110
Biosynthesis of secondary metabolites
cobe01120
Microbial metabolism in diverse environments
cobe01200
Carbon metabolism
cobe01212
Fatty acid metabolism
Module
cobe_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
CLAM6_06000 (fadB)
00650 Butanoate metabolism
CLAM6_06000 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
CLAM6_06000 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
CLAM6_06000 (fadB)
00310 Lysine degradation
CLAM6_06000 (fadB)
00380 Tryptophan metabolism
CLAM6_06000 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
CLAM6_06000 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
CLAM6_06000 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
CLAM6_06000 (fadB)
00930 Caprolactam degradation
CLAM6_06000 (fadB)
Enzymes [BR:
cobe01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
CLAM6_06000 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
CLAM6_06000 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
CLAM6_06000 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
CLAM6_06000 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Arm-DNA-bind_1
Motif
Other DBs
NCBI-ProteinID:
BBO55289
UniProt:
A0A5K7Y6P5
LinkDB
All DBs
Position
726586..728736
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AA seq
716 aa
AA seq
DB search
MIYSGKTLTVEANQDAIALLTLDLEGESVNKLASYVLKELGEAVEAIKATADLKGLVIRS
AKEAFVVGADITEFHQMFEKDEAFLIDMNMNIHGIFNAIEDLPFPTVTAINGLALGGGCE
ITLTTDFRVMADSAKIGLPETKLGIIPGWAGCVRLPRLIGADNAIEWICGGTENRADKAL
AVGAVDAVLPVAELDAAALDILARANAGELDYQARRLEKTSPLKLNAIEQMMAFETAKGF
VAGKAGPHYPAPVEAIKVIQKGAGESRERAQAIEAKTFARMALTDVAFNLVGLFMNDQVV
KKKAKGYEKQASEIKQAAVLGAGIMGGGIAYQSASKGTPILMKDINGEAIELGLKEARKL
FGKGVERGKLTTEKMAQGLSNIRPTLSYGDFGNVDLVVEAVVENPKVKASVLAELEDNVA
EDAILTSNTSTISITRLAESLKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDAAIAATVA
YARQMGKTPIVVNDCPGFLVNRVLFPYFGGFSLLVEKGADYQRVDKVMEKFGWPMGPAYL
LDVVGMDTAVHANAVMAEGFPDRMARDGKTAIQVMYDNKRLGQKNDLGFYRYEEDRKGKP
KKLADDEAQALVAQVVSETREFSDEDIIARMMVPLCMETIRCLEDDIVGSPAEADMALIY
GIGFPPFRGGALRYVDAMGVAEFVALADSLADELGPLYRPTEALRERAKRGEAFYS
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctattcaggcaaaacgctaaccgtcgaggccaatcaggacgccatcgccctgttg
accctcgaccttgaaggcgaatcggtcaacaagctggccagctacgtactcaaggagctg
ggagaggcggtcgaggccatcaaggcgacggccgatctcaaggggctggtcatccgctcc
gccaaggaggcgttcgtggtcggtgccgacatcaccgagttccatcagatgttcgagaag
gatgaagccttcctcatcgacatgaacatgaacatccatggcatcttcaacgccatcgag
gacctgccgttccccacagtcactgccatcaatgggctggcgctgggcggcggctgcgag
atcaccctgaccaccgatttccgggtcatggctgacagcgccaagatcggcctgccggaa
accaagctcggcatcatcccgggctgggcgggctgtgtacgcctgccgcgcctgatcggg
gcggacaacgccatcgagtggatctgtggtggcaccgagaaccgtgccgacaaggcgctg
gcagtgggcgccgtcgatgccgtcctgccggtggccgagctggacgcggcggcactcgac
attctggcgcgtgccaatgccggcgagctggactatcaggcgcgtcgtctcgagaagacc
tcgccgctcaagctcaatgccatcgagcagatgatggccttcgagaccgccaagggcttc
gtggccggcaaggccggtccgcactatccggcgccggtggaggccatcaaggtcatccag
aagggcgcgggggaatcgcgtgagcgtgcccaggccatcgaggccaagaccttcgccagg
atggcgctgaccgacgtggccttcaatctggtcggcctgttcatgaacgatcaggtggtc
aagaagaaggccaagggttacgagaagcaggccagcgagatcaagcaggccgccgtgctg
ggggccggcatcatgggcggcggcatcgcctatcagagcgccagcaagggcacgccgatc
ctgatgaaggacatcaacggcgaggccatcgaactgggcctgaaggaggctcgcaagctg
ttcggcaagggtgtcgagcgcggcaagctgaccaccgagaagatggcgcagggcctgtcc
aacatccgcccgacgctgtcctacggtgacttcggcaatgtggacctggtcgtcgaggcg
gtggtcgagaatcccaaggtcaaggcctcggtgctggccgagctcgaggacaacgtcgcc
gaggacgccatcctgacctccaacacctcgaccatctccatcacgcggctggccgagtcg
ctcaagcgtcccgagaacttctgcggcatgcacttcttcaacccggtgcaccgcatgccg
ctggtcgaggtcatccgtggcgagaagtccagcgatgcggccatcgccgcgaccgtcgcc
tatgcccgccagatgggcaagacgccgatcgtcgtcaacgactgcccgggctttctggtc
aaccgcgtgttgttcccctacttcggtggcttcagcctgctggtcgagaagggcgccgac
tatcagcgcgtcgacaaggtgatggagaagttcggctggccgatgggcccggcctacctg
ctggatgtggtcggcatggataccgcggtgcacgccaatgccgtgatggcggaaggcttc
ccggaccgcatggcgcgagacggcaagaccgccatccaggtgatgtacgacaacaagcgc
ctcggccagaagaacgatctgggcttctaccgctacgaggaagaccgcaagggcaagccg
aagaagctggcggatgatgaggctcaggcgctggtggcccaggtcgtcagcgagacgcgc
gagttctccgatgaagacatcatcgcgcgcatgatggtgccgctgtgcatggaaaccatc
cgctgcctggaagacgacatcgtcggcagcccggccgaggccgacatggccttgatctac
ggcatcggtttcccgccgttccgtggtggcgctctgcgctatgtcgatgccatgggcgtg
gccgagttcgtcgcgctggccgacagcctggccgatgagctggggccgctgtatcgcccg
accgaggcgctgcgcgagcgcgccaagcgtggtgaagccttctactcctga
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