Cobetia sp. AM6: CLAM6_09340
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Entry
CLAM6_09340 CDS
T08724
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cobe
Cobetia sp. AM6
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cobe03009
]
CLAM6_09340 (rlmD)
Enzymes [BR:
cobe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CLAM6_09340 (rlmD)
Ribosome biogenesis [BR:
cobe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CLAM6_09340 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltrans_SAM
Methyltransf_25
TRAM
Methyltransf_31
Methyltransf_ANTKMT
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
BBO55623
LinkDB
All DBs
Position
1117069..1118472
Genome browser
AA seq
467 aa
AA seq
DB search
MALLGQKRPARKPTRREKEVASRGTRNASDADSQWLTVDRLAHDGRGIAHDESGKTQFID
QALPGERVTLAIHRTHKRFNEAHVRARDNAADSRVTPPCGYFGSCGGCDLQHMALDAQRT
HKVQVLGEHATRNGVTLPEIQPLGEDESRYRRRARIGVRVTDAGELQFGFRGRGSNQLVD
ITTCSVLVPELDRLLAPLRELIESLEAPKRLGHLELTAAEGQVIVVVRQLKAVPRDAQRW
QAFAEQHGLVVGWRVGRDPVVLEWLSGTPNAAYSLNIGATTLRLAFSPGDFVQVNAALNQ
RLIDTAFEWLGDVSGLKVMDLYAGVGNLTLAAAAAGASEVTGIEGSQGMVDQLMVNAEAN
GLAQVSARRADLSKALPSLEGIDLLVLDPPRDGAQPLCEELARDLHAGRVSRVPQRVLYI
ACDPTTLMRDARLLQEAGYRVTRALMADMFVHTAHLESMLLLERAED
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgctcggacagaagcgaccggcgcgcaagccgacccgtcgcgagaaggaagtg
gccagtcgtggcacccgcaatgccagcgacgccgacagccagtggctgacggtcgaccgc
ctggcccatgatgggcgcggcatcgcccatgacgagagcggcaagacccagttcatcgat
caggccctgcccggcgagcgcgtgacgctggccatccaccgcacccacaagcgcttcaat
gaggcgcatgtgcgtgcacgtgacaacgcggctgacagtcgtgtgacgccgccctgtggc
tatttcggcagctgtggcggctgtgatctgcagcatatggcgttggatgcacagcgcacc
cataaggtgcaggtgctgggcgaacatgcgacacgcaatggcgtgacgctgcccgagatt
cagcctctgggcgaagatgaaagccgttatcgccgtcgcgcgcgcatcggcgtacgcgtg
accgatgccggtgagttgcagttcggcttccggggacgcggcagcaaccagctggtcgat
atcaccacctgcagcgtgctggtgccggagctggaccgcctgctcgcgccgctgcgtgag
ctgatcgaaagcctcgaggcgcccaagcgtctgggccatctggagctgaccgctgccgaa
gggcaggtcatcgtggtggtgcgccagctcaaggcggtgccgcgtgatgcgcagcgctgg
caggccttcgccgagcagcatggcctggtggtcggctggcgggtcggacgtgatccggtg
gtgctggagtggctgtcgggcacgccgaacgccgcgtattcgctgaatatcggcgcaacg
acgctgcgtcttgccttctcgccgggcgacttcgtgcaggtcaatgcggcgctcaatcag
cgtctgatcgacaccgccttcgaatggctgggcgacgtcagtggcctcaaggtgatggac
ctctacgccggtgtcggcaacctgaccctggcggcggccgcggccggcgccagtgaggtg
acgggcatcgagggcagtcagggcatggtcgatcagctgatggtcaacgccgaagccaac
ggcctggctcaggtgagtgcacgtcgagcggacctgagcaaggccctgccgtcactcgag
ggtatcgaccttctggtactagacccgccgcgtgatggcgctcagcctctctgcgaggag
ctggcacgtgatctgcatgctgggagggtcagccgagtgccgcagcgtgtgctgtacatc
gcctgtgacccgaccacgttgatgcgtgatgcacggctgttgcaggaggccggttatcgc
gtcacgcgtgccctgatggcggacatgttcgttcacacggcacatctggaatcgatgttg
ctgctggagcgggcggaagactga
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integrated database retrieval system
