KEGG   Cobetia sp. AM6: CLAM6_16240
Entry
CLAM6_16240       CDS       T08724                                 
Name
(GenBank) hypothetical protein
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
cobe  Cobetia sp. AM6
Pathway
cobe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cobe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CLAM6_16240
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLAM6_16240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cobe03021]
    CLAM6_16240
   03036 Chromosome and associated proteins [BR:cobe03036]
    CLAM6_16240
   03400 DNA repair and recombination proteins [BR:cobe03400]
    CLAM6_16240
Enzymes [BR:cobe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CLAM6_16240
Transcription machinery [BR:cobe03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CLAM6_16240
Chromosome and associated proteins [BR:cobe03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    CLAM6_16240
DNA repair and recombination proteins [BR:cobe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CLAM6_16240
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII LCE6A
Other DBs
NCBI-ProteinID: BBO56313
UniProt: A0A5K7Y4C2
LinkDB
Position
complement(1932367..1935216)
AA seq 949 aa
MIKADETHAEPARYRIAVRELCAFAAREGDLDLRFTPSPTAQQGIRGHQRIVRRRGKDYE
SEISLSGDIGNLTIRGRADGYDPKRNCLEEIKTHRGDLSRQPAHHRALHWAQARVYGALM
CRSRDLEGITLALVYLDIAADAPRGTKSEHDEQNEQNEQTDQADPKSRKAQPDEQRLEAW
WSREALEAELARLAARFSEFAANELAHRSARDSALSRLAFPWPSWRPGQRQLAEHAYKAV
MTGRELLAEAPTGTGKTLATLYPALRAMPASGTDRLFYLTARTPGRALALDALATLAPAA
DDSEGQKKTPATPLRILELGARSKTCEHPSLACHGESCPLARGFYDRLPAARDAALADQR
LLNLATTRRHALAHDICPYFLAQELSRWADVIIGDHNHYFDSHALLFALSQANDWRTVVL
VDESHNLIERARGMYSTELDARQFHFLLKQLSRKGHPAPLRSASRALARQWRALEQLKQG
ADGETQASKVDSKDEGHKAQRLALEALPGDFLKALSQWTGAMGDWLAEPDKAANPAAARQ
QPATATQAPEQLGLIASDAPSAAPSATDTGTATTVSGSASSTARRRVEPDVEMMEAYFAA
LTLARLAEGFGDHSLFEVELSATPPARQASLASDSSSSSGAASDAGTEADASARPHKARG
RSVRQIQPRLRCVSPAPWLAPRLRASHAILLFSATLNPPAYHHRLLGLADDAVWLSVDSP
FSAAQVQVSRHRLSTRLRDRDASCRPIAELMARQYRQRPGNYLAFFSSFAYLEQVASTLQ
QLAPEIPQWRQTRAMTEAERTGFIQRFTPEGQGIGFAVLGGAFGEGIDLPGSRLIGAFIA
TLGLAGFSPENEALKQRLATWLDNDAQRRSQPEQAEGDPHDDTRAPYPVIQPLNADDCTY
LYPGLTRVVQAAGRVIRSEQDQGVIHLIDDRFMRPEVARLLPRWWSPTN
NT seq 2850 nt   +upstreamnt  +downstreamnt
atgatcaaggcggacgagacccacgctgagcccgcacgctaccggatcgcagtacgcgaa
ctgtgtgcctttgccgcgcgcgagggcgatctggacctgcgcttcacgccatcgcctacc
gcccagcagggcatccgtggtcatcagcgtatcgtgcgccgacgcggcaaggactatgaa
agcgagatctcgctcagcggtgacatcggcaatttgaccatccgtgggcgcgccgatggc
tatgatcccaagcgcaactgcctcgaggagatcaagacccatcgcggcgacctctcccgc
cagcccgcgcaccatcgcgccctgcattgggcccaggcacgcgtctacggcgcactgatg
tgtcgcagccgggacctcgaaggtatcacgctcgcgctggtctatctggacatcgcggcg
gatgcgcccaggggcaccaagagcgagcatgatgagcagaacgagcagaacgagcagact
gaccaggctgaccccaaaagccgcaaggcacagcctgatgagcagcgtctggaagcctgg
tggagccgtgaggcgctggaggcggagctggcacgtctggcggcacgcttcagcgagttc
gccgccaatgagctggcccatcgcagtgcccgcgacagcgcgctgagccgcctggccttt
ccgtggccgagctggcgccccggtcaacgccaactggccgagcatgcctacaaggcggtg
atgaccggccgcgagctgctcgccgaggcgccgaccggtaccggcaagaccctggccacg
ctgtatccggcactgcgcgcgatgcccgcaagcggcacggacagactcttctacctcacc
gcccgcaccccgggccgcgcgctggcactcgacgcgctggccaccttggcaccagccgct
gacgacagcgaggggcagaaaaagacaccggcgacaccgctgcgcattctggaactgggc
gcgcgcagcaagacctgcgagcacccgtccctcgcctgtcatggcgagtcctgcccgctg
gcgcgcgggttctatgatcgcctgcccgcggcacgcgacgccgcgctcgccgaccaacgc
ctcctgaatctggcgacgacacgccgccacgccctggcccacgacatctgcccctacttt
ctcgcccaggagctctcgcgctgggcggatgtcatcatcggcgaccataaccactacttc
gacagtcatgcgctgctgttcgccctgagccaggccaatgattggcgcacggtggtgctg
gtcgatgagagccacaacctcatcgagcgcgcccgcggcatgtacagcaccgagctcgac
gcccgccagttccacttcctgctcaagcagttgagccgcaagggccatccggccccgctg
cgctcggcttcacgcgcactggctcggcaatggcgagcgctggagcagctcaagcagggt
gctgacggcgagacacaggcaagcaaggtcgatagcaaggacgaaggccacaaggcgcag
cgccttgcactggaggcgctacccggcgacttcctcaaggccttgagccaatggaccggc
gcgatgggcgactggttggcggagcctgacaaggccgcaaaccctgctgcggccaggcaa
cagccagcgacagccacacaagcccccgaacagctgggcctgatcgcaagcgatgccccc
tctgctgctccgagtgctaccgatacaggcactgcaacgacagtctccggctcggcctct
tccacggccaggcgccgcgtggaacccgatgtcgagatgatggaggcctactttgcggca
ctgaccctggcgcgactcgccgaaggctttggcgatcactcgctgttcgaggtcgaactc
tccgccacgccccctgcgcggcaggcgtcgcttgccagcgattcaagctcgagttccggc
gcagcatcggatgcaggaacagaagctgacgcgtcagcccggccacacaaggcccgcggg
cgcagcgtgcgccagatccagccgcgactgcgctgcgtcagtccggcgccgtggctggca
ccccgcctgcgcgccagtcacgccatcctgttgttctcggccacactcaatccaccggcc
tatcaccatcgcctgctgggtctggcggacgatgccgtctggctgagtgtcgattccccg
ttcagcgcggcccaggtgcaggtcagtcgtcatcggctctcgacacgcctgcgggatcgc
gacgcctcctgccggccgatcgccgagttgatggcgcgccaataccggcaacgcccgggc
aactatctggcgttcttctcgagcttcgcctatctggaacaggtcgccagcaccctgcaa
cagctggcgccggagattccccaatggcgccagacccgcgccatgacggaagcggagcgc
accggcttcattcagcgcttcacgcccgagggacaaggcatcggcttcgcggtgctgggt
ggcgccttcggcgaagggatcgatctgcccggctcgcgtctgatcggggccttcatcgcc
accctcggactggccggtttcagtcccgagaatgaagcactcaagcagcgtcttgccacg
tggctcgacaacgacgcacagcggcgtagccagccggaacaggctgaaggcgacccacac
gacgatacgcgcgcaccgtacccggtcatccagcccttgaatgccgatgactgcacctat
ctgtacccggggctcaccagagtggtgcaggctgccggccgagtgattcgcagcgagcag
gatcagggcgtgatccacttgatcgatgaccgcttcatgcgcccggaagtcgcacggttg
ctgccacgctggtggtcaccgacgaattga

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