Cobetia sp. AM6: CLAM6_19330
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Entry
CLAM6_19330 CDS
T08724
Symbol
uvrB
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLAM6_19330 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_19330 (uvrB)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLAM6_19330 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLAM6_19330 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
DUF87
AAA_22
AAA_30
UB2H
AAA_5
KdpC
Motif
Other DBs
NCBI-ProteinID:
BBO56622
LinkDB
All DBs
Position
complement(2303087..2305114)
Genome browser
AA seq
675 aa
AA seq
DB search
MSKPFRIDSKFQPAGDQPAAIEKLITGLDAGLAHQTLLGVTGSGKTFTVANIVERLQRPA
IVMAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVASSDTFIEKDASINDHIE
QMRLSATKALLERRDAIIVVSVSAIYGLGDPDQYLKMRLHFNRGEQIDQRGFLRRLAELQ
YTRNDMDFRRGTYRVRGDVIDIFPADSEEQAVRVELFDDEIDSIRLFDPLTGEVAESVPR
MTIYPKSHYVTPRETIVAAVDRIKEELVERLDYLRKHDKLVEAQRLEQRTLYDIEMMMEL
GYCNGIENYSRYLSGRDPGNAPPTFFDYLPKDALVFIDESHVSVPQVGGMYRGDRSRKET
LVEYGFRLPSALDNRPMKFEEWESILPQTVFVSATPGPYEEEHAGQVVEQVVRPTGLLDP
IIEVRSASTQVDDVLSEIKARTQVGERVLITTLTKRMSEDLTEYLGEHDVRVRYLHSDID
TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNANGKAILYGDRITDSMQRAIAETERRREKQMAFNDEHGITPRTITKSVADIMEGAQ
APGRKSSRRKGSERQVAEETPDYAALAAEGPQALEKEISRLEDAMFAAAKNLEFEEAGRL
RDQINDVRNRLIALG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccatttcgcatcgattccaagtttcagccggccggtgaccaaccggcggcc
atcgagaagctgataaccggcctggacgcgggtctggcgcatcagaccctcctgggcgtg
accggctccggcaagaccttcacggtggccaacatcgtggagcgtctgcagcgcccggcc
atcgtcatggcccccaacaagacgctggcggcacagctgtacggcgagttcaagtcgttc
ttccccgacaacgccgtcgaatatttcgtctcctattacgattactatcagcccgaagcc
tacgtcgcctcctcggacaccttcatcgagaaggatgcctcgatcaacgaccatatcgag
cagatgcgcctgtcggcgaccaaggcgctgctggaacgccgcgatgcgatcatcgtggtc
tccgtctcggccatctacggcctgggggatccggatcaatacctgaagatgcgcctgcac
ttcaatcgtggtgagcagattgaccagcgtggcttcctaaggcgtctggcggagctgcag
tacactcgcaacgatatggatttccggcgcggtacgtatcgggtgcgtggcgacgtgatc
gacatcttcccggccgactccgaagagcaggcggtgcgtgtcgagcttttcgatgacgag
atcgattccatccggctgttcgatccgctgaccggtgaagtggccgagtcggtgccgcgc
atgaccatctatcccaagagtcactacgtgacgccgcgcgagaccatcgtcgctgcggtc
gatcgcatcaaggaagaactcgtcgagcgcctcgattacttgcgcaagcacgataagctg
gtcgaggcccagcgcctggagcagcgtaccctctatgacatcgagatgatgatggagctg
ggctactgcaatggcatcgagaactactcgcgctatctgtcggggcgtgatcccggcaat
gcgccgccgaccttcttcgactacctgcccaaggatgcactggtcttcatcgacgagtcc
cacgtcagcgtgccgcaggtcggcgggatgtaccgcggtgaccgatcgcgcaaggagacg
ttggtggagtacggcttccgtctgccgtcggccctcgacaaccgcccgatgaaattcgag
gagtgggagagcatcctgccccagacggtattcgtctcggcgacgcctggcccctatgag
gaagaacatgccggccaggtggtggagcaggtggtacgtcccaccgggctgctcgatccg
atcatcgaggtgcgttcggcctcgacccaggtcgatgatgtgctctccgagatcaaggcg
cgcacccaggtgggcgagcgcgtgctgatcaccacgctgaccaagcgcatgtcggaagac
ctgaccgagtatctgggagagcatgatgtgcgggtgcgctatctgcactccgatatcgac
accgtcgagcgtgtcgagatcattcgtgacctgcgtctgggcaagttcgatgtgctggtc
ggcatcaacctgctgcgtgagggtctcgatataccggaggtctcgctggtggcgattctg
gatgccgacaaggaaggcttcctgcgctcggaacgctcgctgatccagaccatcggccgc
gcggcgcgtaatgccaacggcaaggccattctgtacggggatcgcatcaccgattccatg
cagcgggccatcgccgagaccgaacgccgtcgcgagaagcagatggccttcaatgacgag
cacggcatcacgccgcgcaccatcaccaagtcggtggcggatatcatggaaggtgcccag
gcaccgggccgcaagagcagccgtcgcaagggcagcgagcgtcaggtggcggaagagacg
ccggactacgccgcgctggcggccgaaggtcctcaggcgcttgaaaaggagatcagccgt
ctcgaagatgccatgtttgccgcggccaagaacctcgagttcgaggaagccggtcgactg
cgcgaccagatcaacgacgtccgcaatcgcctgatcgcgctgggctga
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integrated database retrieval system
