Cobetia sp. AM6: CLAM6_21250
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Entry
CLAM6_21250 CDS
T08724
Symbol
rffG
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe00521
Streptomycin biosynthesis
cobe00523
Polyketide sugar unit biosynthesis
cobe00525
Acarbose and validamycin biosynthesis
cobe00541
Biosynthesis of various nucleotide sugars
cobe01100
Metabolic pathways
cobe01110
Biosynthesis of secondary metabolites
cobe01250
Biosynthesis of nucleotide sugars
Module
cobe_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CLAM6_21250 (rffG)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CLAM6_21250 (rffG)
01055 Biosynthesis of vancomycin group antibiotics
CLAM6_21250 (rffG)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CLAM6_21250 (rffG)
00525 Acarbose and validamycin biosynthesis
CLAM6_21250 (rffG)
Enzymes [BR:
cobe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
CLAM6_21250 (rffG)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
adh_short
NAD_binding_10
KR
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
BBO56814
UniProt:
A0A5K7Y4L2
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Position
complement(2518982..2520055)
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AA seq
357 aa
AA seq
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MKFLITGGAGFIGSAVVRELIDSTSHEVVNLDKLTYAGNLDSLVSVSDHPRYVFEHADIC
DAEALARIFSVHQPDIVMHLAAESHVDRSIDGPEAFIETNVMGTCRLLEASRRYWKQLVL
TDPAKAEMFRFHHISTDEVFGDLAEDDPGFTEQTPYAPSSPYSASKAGSDHLVRAWQRTF
GLPTVMTNCSNNYGPYHFPEKLIPLTILNALAGKPLPVYGNGHQVRDWLYVEDHARALIK
VACEAPLGESYNIGGHNEQRNIDVVRLICETLEALVPQKPAGLAHYRDLITFVTDRPGHD
LRYAIDADKIARDLGWRPRETFESGLRKTIQWYLDNPEWWQRIRDGRYQGERLGAEI
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcctgattaccggcggcgccgggttcatcggctctgccgtggtgcgcgaactg
atcgattcgacgtcccatgaagtggtcaacctggacaaactgacctatgcgggcaatctg
gattcgctggtgtccgtcagtgatcatccgcggtatgtcttcgagcatgcggacatctgt
gatgccgaggcgctggcacgaatcttcagtgtgcatcagccggatatcgtcatgcacctt
gctgcagagagtcatgtcgaccgctccatcgacggtccggaggccttcatcgaaaccaat
gtcatgggcacctgccgattgctggaggcgtcacgacgttactggaagcaattggtgttg
acggatccagccaaggctgaaatgttccgcttccatcacatctcgaccgatgaagtgttt
ggtgatcttgcagaggatgaccctggcttcacggagcagacaccctatgcgccgagttcg
ccctattcggccagcaaggcgggatcggaccatctggtaagagcctggcagcgaaccttc
ggtctaccgacagtgatgaccaactgctcgaacaattatggcccctatcacttccccgag
aagttgattcccctgaccatcctcaatgccctggcgggcaagccgctgccggtgtatggc
aatggccatcaggtgcgcgattggctgtacgtcgaggaccacgcgcgtgccttgatcaag
gtggcgtgcgaggcgccgctgggggaaagctacaacatcggggggcataacgagcagcgc
aatatcgacgtggttcgcctgatctgtgagacgttggaagccttggtgccgcaaaagcct
gcaggccttgcgcattaccgtgatctcatcaccttcgtgaccgacaggcccgggcacgat
ctgcgttatgccattgatgccgacaagatagcgcgtgatctggggtggcggccgcgggag
accttcgagtcgggcctgcgcaagacgattcagtggtatctggataatcctgagtggtgg
cagcgaattcgtgatggccgctatcagggagagcgtctgggagccgagatctga
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