Cobetia sp. AM6: CLAM6_26670
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Entry
CLAM6_26670 CDS
T08724
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cobe
Cobetia sp. AM6
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cobe03016
]
CLAM6_26670 (truD)
Enzymes [BR:
cobe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
CLAM6_26670 (truD)
Transfer RNA biogenesis [BR:
cobe03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CLAM6_26670 (truD)
Prokaryotic type
CLAM6_26670 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
BBO57356
UniProt:
A0A5K7Y4E3
LinkDB
All DBs
Position
complement(3188645..3189820)
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AA seq
391 aa
AA seq
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MSEVNDMSESPEADALFAEALTALDAAGSEAWVKEAELMQRWPHAHGGPLGAGDFRHTPE
DFRVTELMDFVPEGHGEHQWLWVEKRGLTTDELCRELASLCEVAPRDIGVAGLKDKQAIT
QQWVSVWLPGREAPQDLSDALAEKGVRVLASVRHPRKLKRGVHRGNRFALRVSGEAVAHP
ELEARWQTLIRDGVPNYFGPQRFGHQGHNLGRARAVLVRGWRKRDDRSGMLLSTARSFLF
NEVLAARLKAHCWATALSGEVFALNGTGSRFVTDGSESTETLAQRLASGDIHPTGPLWGT
GRAEAHAQVAQLEQVLATRWPQLCEGLEKAGVKAERRPLRLMPGKPRLEWDVTPKQAHAE
GSEASVWLHFDLPRGSFATGLLRELIAHPLL
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagtgaatgacatgtctgagtcgcctgaggcggatgccctgtttgccgaggcg
ctgacggcgctggacgccgcgggcagcgaggcgtgggtcaaggaagccgaattgatgcag
cgctggccgcatgcgcatggcggcccgctgggagccggcgacttccgtcacacgcccgag
gacttccgggtcaccgagctgatggacttcgtgcccgaaggtcacggtgagcatcagtgg
ctgtgggtcgagaaacgcggcctgaccaccgatgagctgtgccgtgaactggccagcctg
tgtgaggtcgcgccgcgcgatatcggcgtggccggtctcaaggacaagcaggcgatcacc
cagcagtgggtctccgtgtggttgccggggcgtgaagcgccgcaggatctcagcgatgcg
ctggccgagaagggcgtccgcgtgctggccagcgtgcgtcatccgcgcaagctcaagcgt
ggcgtgcatcgcggcaaccgcttcgcgctgcgtgtcagtggtgaggccgtcgcgcatccc
gagctcgaggcgcgctggcagacgctgatacgtgatggtgtgcccaactatttcgggccg
cagcgcttcgggcatcagggacataatctcggccgggcacgtgccgtgctggtgcgtggc
tggcgcaagcgtgatgaccgcagcggcatgctgctgtcgaccgcgcgcagcttcctgttc
aacgaggtgctggccgcgcggctcaaggcgcattgctgggcgacggcgttgagcggtgag
gtgtttgcgctcaacgggacgggctcgcgcttcgtcaccgacggcagcgagtcgaccgag
acgctggcgcagcgcctggcgagtggcgatattcatcccactggcccgctgtggggcacc
gggcgtgcggaggctcatgctcaggtcgcccagctcgagcaggtcctggccacgcgttgg
ccgcagctgtgcgaggggcttgagaaggccggcgtcaaggcggagcgtcgcccgctgcgc
ctgatgcccggcaagccgcgtctggagtgggatgtcacgccaaagcaggcgcacgccgaa
ggcagcgaagccagtgtctggctgcacttcgatctgccgcgcggcagcttcgcgacgggc
ctgttgcgtgagctgatcgcccacccgctgctgtag
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