Cobetia sp. AM6: CLAM6_27220
Help
Entry
CLAM6_27220 CDS
T08724
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAM6_27220 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobe03019
]
CLAM6_27220 (groL)
03110 Chaperones and folding catalysts [BR:
cobe03110
]
CLAM6_27220 (groL)
03029 Mitochondrial biogenesis [BR:
cobe03029
]
CLAM6_27220 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cobe04147
]
CLAM6_27220 (groL)
Enzymes [BR:
cobe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
CLAM6_27220 (groL)
Messenger RNA biogenesis [BR:
cobe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CLAM6_27220 (groL)
Chaperones and folding catalysts [BR:
cobe03110
]
Heat shock proteins
HSP60 / Chaperonin
CLAM6_27220 (groL)
Mitochondrial biogenesis [BR:
cobe03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
CLAM6_27220 (groL)
Exosome [BR:
cobe04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
CLAM6_27220 (groL)
Exosomal proteins of other body fluids (saliva and urine)
CLAM6_27220 (groL)
Exosomal proteins of breast cancer cells
CLAM6_27220 (groL)
Exosomal proteins of colorectal cancer cells
CLAM6_27220 (groL)
Exosomal proteins of bladder cancer cells
CLAM6_27220 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BBO57411
LinkDB
All DBs
Position
3253717..3255366
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKDVRFSDDARKRMARGVNVLADAVKTTLGPKGRNVVLEKSFGAPTVTKDGVSVAKEI
ELKDRFENMGAQMVKEVASKTSDVAGDGTTTATVLAQSIVNEGLKGVTAGMNPMDLKRGI
DKAVIEAVKAVRELSVPCTDTKAIAQVGTISANGDSRIGEIIAEAMEKVGKEGVITVDEG
RGFEDELEVVEGMQFDRGYLSPYFVTNQDTMAVELEDPYILLVDKKISNIRELLPVLEGV
AKSGKPLAIIAEDIEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTV
ISEEVGLNLEQANLDHLGTAKRVTMSKENTTIIDGAGNEGDIEARVAQIRAQIEETSSDY
DREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDALHSTRAAVEEGVVPGGGTALV
RVLGQLVDLKGDNEDQTHGIAIALRAMEAPLRQIVTNAGEEASVVLNNVKAGEGNYGYNA
STGVYGDMFEMGVLDPAKVTRSALQSAASIGGLMITTECMIAEDPEDKAAAGGGDMGGMG
GMGGMGGMM
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaagacgttcgtttctccgatgatgcacgcaagcgcatggcgcgtggtgtc
aatgtcctggccgacgcggtcaagactaccctcggtccgaaaggccgtaacgtggtactg
gaaaaatccttcggcgctccgaccgtcaccaaggacggcgtttccgtcgccaaggaaatc
gagctgaaggatcgcttcgagaacatgggcgcccagatggtcaaggaagtcgcttccaag
acttctgacgtggctggcgacggcaccaccactgccaccgtgctggctcagtccatcgtc
aacgaaggcctgaaaggcgtgaccgcgggcatgaacccgatggacctgaagcgcggcatc
gacaaggccgtcatcgaagccgtcaaggccgtgcgtgagctgtccgtgccgtgcaccgac
accaaggccatcgcccaggtcggcaccatctccgccaatggcgactctcgcatcggcgag
atcatcgcggaagcgatggagaaggtcggcaaggaaggcgtcatcaccgtcgatgaaggt
cgcggcttcgaagacgagctggaagtggtcgaaggcatgcagttcgatcgcggttacctg
tctccgtacttcgtcaccaaccaggacaccatggcggtcgaactcgaagacccgtacatc
ctgctggtcgacaagaagatctccaacatccgcgaactgctgccggtgctggaaggcgtt
gccaagtccggcaagccgctggcgatcatcgccgaagacatcgaaggcgaagcgctggcg
actctggtcgtcaacaccatgcgcggtatcgtcaaggtcgctgccgtcaaggcaccgggc
ttcggtgaccgtcgcaaggccatgctgcaggacatcgctgtcctgaccggtggcaccgtg
atttccgaagaagtcggcctcaacctcgaacaggccaacctggaccacctgggcaccgcc
aagcgcgtgaccatgtccaaggaaaacaccaccatcatcgatggcgccggcaacgaaggc
gatatcgaagcacgcgttgcccagatccgcgctcagatcgaggaaacctcctctgattac
gaccgcgagaagctgcaggaacgtgtcgccaagctggccggcggcgttgccgtcatccgc
gtcggtgctgccaccgaagtcgagatgaaagagaagaaggctcgcgtcgaagacgccctg
cactccactcgtgcagccgtcgaggaaggcgtcgtgcctggcggtggtactgccctggtt
cgcgtgctgggtcagctggtcgacctgaaaggcgacaacgaagatcagactcacggtatc
gccatcgcactgcgtgccatggaagctccgctgcgtcagatcgtcaccaacgccggtgaa
gaagcctctgtcgtgctcaacaacgtcaaggctggcgaaggcaactacggttacaacgcc
tctaccggcgtctacggcgacatgttcgagatgggcgtgctggatccggccaaggtgacc
cgttctgcactgcagtccgcggcctccatcggcggtctgatgatcaccaccgaatgcatg
atcgctgaagatccggaagacaaggccgctgccggcggcggcgacatgggtggcatgggc
ggcatgggtggcatgggcggcatgatgtaa
DBGET
integrated database retrieval system
