Cobetia sp. AM6: CLAM6_28100
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Entry
CLAM6_28100 CDS
T08724
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03030
DNA replication
cobe03430
Mismatch repair
cobe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLAM6_28100
03430 Mismatch repair
CLAM6_28100
03440 Homologous recombination
CLAM6_28100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobe03032
]
CLAM6_28100
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_28100
Enzymes [BR:
cobe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLAM6_28100
DNA replication proteins [BR:
cobe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLAM6_28100
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLAM6_28100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
AAA
DNA_pol3_tau_5
RuvB_N
AAA_22
AAA_5
AAA_14
AAA_18
AAA_16
AAA_2
AAA_30
AAA_19
TsaE
Mg_chelatase
nSTAND3
AAA_28
PIF1
AAA_24
ABC_tran
Rad17
Motif
Other DBs
NCBI-ProteinID:
BBO57499
UniProt:
A0A5K7YC37
LinkDB
All DBs
Position
complement(3358401..3360632)
Genome browser
AA seq
743 aa
AA seq
DB search
MSYQVLARKWRPRNFHELIGQEHVSRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAK
CLNCEEGVSSRPCGVCGTCREIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYAPTQGRY
KVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFTLKNMPP
VRVVEHLSDILAREEVSFEEDALWLLGKAADGSMRDAMSLTDQAIAFGHGQVRREDVAAM
LGTLDHRHVLALLECLASLDAASLLAEVATLAEQGPDYGGVLDDMASVFHRLAIAQMVPS
ALDNGHGDRDALLALASRFTGEDVQLYYQIALQGRGDMANAPDARTALEMTLLRMLAFRP
QGVPRPAQTPLPMTGQAEGANAPGAQASAPVQQAPVQQAPVQAAPAQQAPVQQAPAQPQQ
APVPPMAPAPQPAAPVAAPATEAQPPMADEPPPWATEDVPQDARDAGFRDVAQDAPQPAA
APVSAPAPEQTAAPAQAPAAPSSAMSRLSAAFGSAPAQPEAAESSAPQPAEMAAPKAAEA
VPAAPQPAEAVPAALEPAVSPSPEPVVSEPVVSEPVASVAAQPLPEPAPAPAPAPAPTPA
TAPSAPSADGRLNHAAWLELFPSLGLGGITRNIGAHCLVEHDDGTHLKLRLDPAQSAMMA
EVHQERIRKALAGQGVERVLEISVAPLPEGLETPHSRRIRLLGERHVRAVEALRADPHIQ
SMEQQLGARLIEESVNSFEPDDF
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcaggtattggcgcgcaagtggcgcccgcgcaattttcacgaactgatcggt
caggagcatgtcagccgtgcgctggtcaatgccctcgatcaggggcgcctgcaccatgcc
tatctgttcaccgggacccgcggtgtcggcaagacgacgctggcgcgcattctggccaag
tgcctgaactgtgaagagggcgtcagctccaggccgtgtggcgtgtgtggcacctgtcgc
gagatcgatgagggccgcttcgtcgacctgatcgaagtcgacgccgcctcgcggaccaag
gtcgaggacacgcgtgagctgctggacaacgtccagtacgcgccgacccagggccgctac
aaggtgtacctcatcgatgaggtgcacatgctgtcgacccacagtttcaatgcgctgctc
aagaccctggaagagccgccgccccatgtgaagttcctgctcgcgaccactgatccgcag
aagctgccggtcaccatcctgtcgcgctgcctgcagttcacgctcaagaacatgccgccg
gtgcgcgtggtcgagcacctgtctgacattctcgcccgcgaggaagtcagcttcgaggaa
gacgcgctgtggctgctcggcaaggccgccgatggttcgatgcgtgacgccatgagtctg
accgatcaggcgatcgccttcggccatggccaggtgcggcgcgaagatgtcgccgccatg
ctcggcacgctggatcaccgccatgtgctggcgctgctggagtgtctggcctcgctggac
gccgcgagtctgctggcggaggtcgcgaccctggccgagcaggggccggactacggcggg
gtgctggatgacatggcgtccgtcttccaccgtctggcgatcgcccagatggtgccgagc
gcactggacaacgggcatggcgaccgtgatgcgttgctggcgctggccagccgtttcacc
ggtgaagacgtgcagctctattaccagatcgcccttcaggggcgtggcgacatggccaac
gccccggatgcgcgtaccgcactggaaatgacgctgctgcgcatgctggccttccgcccg
cagggcgtgccgcgcccagcgcagacgccgctgccgatgaccggccaggcggagggtgcg
aacgcgcctggcgctcaagcctcggcgcctgtccagcaagcgcctgttcagcaggctcct
gttcaagcagctccggctcagcaggctcctgtccagcaagccccggcccagcctcagcaa
gcgccggtgcccccgatggcgcccgcgcctcagcctgccgcaccagtggccgcgccagcg
accgaagcacagccgccgatggccgacgagccgcccccgtgggcgacggaggacgttccg
caggacgcccgggatgccggctttcgcgacgtagcgcaagacgcgccccagcctgcggcc
gcgccagtgtcggcgccagcgccagaacagacggcagctcccgcacaggcgcccgctgcg
ccaagctcggcgatgtcacgcctgagtgccgccttcggttccgcgccagcacagccagag
gctgctgagtcatcggcaccgcagcccgctgaaatggcagcgccgaaagccgctgaagct
gtaccagcagcaccgcagcccgctgaagcagtaccagcagcgctagagcccgctgtatcg
ccgtcgcctgagcctgtcgtgtctgagcctgtcgtgtctgagcctgtcgcgtccgtggca
gcgcaaccgctgccggagcctgctcccgcaccggcgccggcgccggcacccacgcctgcg
actgcgccgagcgccccgagtgccgatggtcgtttgaatcacgccgcgtggctggagctg
ttcccctcactggggctgggcggcatcacgcgcaatatcggcgcgcattgcctggtcgag
cacgatgacggcacccacctcaagttgaggctggaccccgcccagtcggcgatgatggcc
gaagtccatcaggagcgcattcgcaaggcgctggcgggccagggcgtggagcgtgtgctg
gagatcagcgtcgcgccgctgccggaaggtctggaaacgccgcacagtcgtcgcattcgt
ctgttgggtgaacgtcatgtgcgcgcggttgaagccttgcgtgctgacccgcatatccag
tccatggagcaacagctgggcgcgcgtctgatcgaggaaagcgtcaactccttcgagccg
gacgatttctga
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integrated database retrieval system
