Cobetia sp. AM6: CLAM6_31450
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Entry
CLAM6_31450 CDS
T08724
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03030
DNA replication
cobe03430
Mismatch repair
cobe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLAM6_31450 (dnaE)
03430 Mismatch repair
CLAM6_31450 (dnaE)
03440 Homologous recombination
CLAM6_31450 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobe03032
]
CLAM6_31450 (dnaE)
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_31450 (dnaE)
Enzymes [BR:
cobe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLAM6_31450 (dnaE)
DNA replication proteins [BR:
cobe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLAM6_31450 (dnaE)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLAM6_31450 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Trypan_PARP
Motif
Other DBs
NCBI-ProteinID:
BBO57834
LinkDB
All DBs
Position
complement(3807083..3810745)
Genome browser
AA seq
1220 aa
AA seq
DB search
MKPEPEPEPEAEAEAEPEPEAEPSASQPPAAPAATTVPAATESFIVTPTSRADSMTTPFV
HLRVHTEFSLVDGLPGVKPLIKATAAAGQPAVAVTDEANLFGLVKFYSNARAAGIKPIIG
ADMWLINPQDATRPYRLTLLAMNDTGYRNLTELISRGWTDGQKQDRAYLEKQWIFEQAEG
LIVLSGGREGEIGRHLLSDHEDSARALLGEWKAVFGDRFYLELTRTQRQYEEECLHLSVA
LAEATDTPVVATNDVRFLKREDYWAHETRVSIGEGKALDDPRRETRYSDEQYLKSAEEMS
DLFSDIPEALENSVLIAARCSVTVQLGTYFLPEFPVPEGMTMDQFFRKVSHDGLTERLDK
LYPHAKHPRDSEAWAEIEQRYRTRLDFELDIILQMGFPGYFLIVMDFIQWGKDNGVPVGP
GRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDYVAE
RYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGITLEKAIEQEPQ
LKEFIDNDEEAQEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFAPLLCDEDGSGLVVQ
FDKNDVEEAGLVKFDFLGLRTLTIIDWATEMVDKIREREGLAPLDIDDIPLDDAKTFDML
QKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKHGRSE
VSYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGQADMLRRAMGKKKPEEM
AKQRAGFMEGCAGKGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTGWLKAHYPG
PFMAAVISTEMQTIEKVVPLIEECRHIGLTVTPPDVNIGGYKFTVDLEGRVVYGLGAIRG
VGEGPIDAIVSARAEGGPFSDIFDFCKRIDAKKINKRTLEALIRSGALDNIGPSRAVLML
AVEDALKAASQNHANNDVGITDMFGDAFSEPETDVYAGYRKAREWTDKERLTGEKDTLGL
YLTGHPIDEYEGELKRFINARISDLKPSREPQRIAGLVIAMRTMKSKRGDTMAFVTLDDR
TGRIEASMFGELYDQVRNKLVPDSVVIVEGEVSQDDYSGGLRLRGKDVTPIIDARARFGE
AVEMSIAAEDIGGRFTQQLTTLLTPHLASEGLPMRLRYRNAAAEAWLELGEQWRVAPSDE
LLIQLGEVEGQRGVRLKYRD
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcccgagcccgagcccgagcccgaggccgaggccgaggccgagcccgagcccgag
gccgagccttcagcctcgcagccgccggcggcacccgcagcgacgacagtacccgccgca
accgaatccttcatcgtcacgccgacttcacgagccgattccatgaccacgccctttgtt
cacctgcgcgttcacaccgagttctccctcgtcgatggtctgcccggcgtcaagccgctg
atcaaggcgaccgccgcggcgggccagccggctgtcgcggtgactgacgaggccaacctg
ttcgggctggtcaagttctactccaatgcgcgcgctgccggcatcaagccgatcatcggg
gccgacatgtggctgatcaatccccaggatgccacgcgcccgtatcgcctcacgctgctg
gcgatgaacgacaccggctatcgcaacctcaccgagctgatctcgcgcggctggaccgat
ggccagaagcaggaccgcgcctacctcgagaaacagtggatcttcgagcaggccgagggc
ttgatcgtgctgtccggtggccgtgaaggcgagatcggccgtcatctgctgtcggaccac
gaagacagcgcccgggcgctgctcggtgaatggaaggcggtgttcggggatcgcttctat
ctggagctgacccgcacccagcgtcagtacgaggaagagtgcctgcacctgtcggtggcg
ctggccgaggccaccgatacgccggtggtcgccaccaatgatgtgcgcttcctcaagcgg
gaggactactgggcccacgagacgcgcgtctccatcggcgaaggcaaggcgctggatgac
ccgcggcgcgagacccgctacagcgatgagcagtacctgaagagcgccgaggagatgagc
gatctgttctccgacattcccgaagcgcttgagaacagtgtgctgatcgcggcgcgctgc
tcggtgaccgtgcagctgggcacctacttcctgcccgagttcccggtgccggaaggcatg
acgatggaccagttcttccgcaaggtctcgcatgatggcctgacggagcgcctcgacaag
ctgtatccccacgccaagcatccgcgcgacagcgaggcctgggccgagatcgagcagcgc
taccgcacgcggctggacttcgagctcgacatcatcctgcagatgggcttccccggttac
ttcctgatcgtcatggacttcatccagtggggcaaggacaacggcgtgccggtcggtccg
gggcgtggttccggtgccggctcgctggtggcctacgcccagaagatcaccgatctggac
ccgctggaatatgacctgctgttcgagcgcttcctgaacccggagcgtgtctccatgccc
gactttgacgtcgatttctgcatggagaagcgtgaccgcgtgatcgattacgtggccgag
cgctacgggcgcaacgcggtctcgcagatcgtcaccttcggcaccatggccgccaaggcc
gtggtgcgtgacgtggcgcgtgcccagggcaagccctactcgctgggtgacaagctctcc
aagctgattcccttcgaggtcggcatcacgctcgagaaggccatcgagcaggagccgcag
ctcaaggaattcatcgacaacgacgaggaagcccaggaaatctgggagatggcgctcaag
ctcgagggcaccacgcgcggcaccggcaagcacgccgggggcgttgtgatcgcgccgacc
aagctgaccgacttcgcgccgctgctgtgtgatgaagacggcagcggtctggtggtccag
ttcgacaagaacgacgtcgaggaggccgggctggtcaagttcgacttcctgggtctgcgc
accctgaccatcatcgactgggcgaccgagatggtcgacaagatccgtgagcgggaaggg
ctggcgccgctggatatcgatgatatcccgctggatgacgccaagaccttcgacatgctg
cagaaggcggagacgacggccgtcttccagctggaatcccgcggcatgaaggagctgatc
aagaagctcaagcccgactgtctggaagacatgatcgccctggtggccctgttccgtccc
ggcccgctgcagtccggcatggtggatgacttcatcaaccgcaagcacggtcgttccgaa
gtgtcttatccacacccggattaccagcatgagctgctcaagccggtactggagccgacc
tacggcatcatcctgtaccaggagcaggtcatgcagatcgcgcaggtgctggccggctat
acgctgggtcaggccgacatgctgcgccgcgcgatgggcaagaagaagccggaagagatg
gccaagcagcgcgccggcttcatggaaggctgtgcgggcaagggcatcgacaaggacctg
gccggcaacatcttcgacctggtggagaaattcgccggttacggcttcaacaagtcgcac
tcggcggcctatggtctcgtctcctaccagaccggctggctgaaggcgcactatccgggg
ccgttcatggccgcggtaatctcgaccgagatgcagaccatcgagaaggtggtgccgctg
atcgaggagtgccgtcatatcggtctgacggtcacgccgccggatgtgaacatcggcggc
tacaagttcaccgtcgacctggaagggcgcgtcgtctacggcctgggcgccatccgtggc
gtcggcgagggcccgatcgatgccatcgtcagtgcgcgcgccgagggtggcccgttcagc
gacatcttcgacttctgcaagcgtatcgacgccaagaagatcaacaagcgcaccctggaa
gcgctgatccgctccggcgcgctggacaacatcggcccgtcgcgtgcggtactgatgctg
gcggtggaggatgcgctcaaggccgcctcccagaatcacgccaacaatgatgtcggcatc
accgacatgttcggcgacgccttcagcgagccggaaaccgatgtctacgccggctatcgc
aaggcgcgcgagtggaccgacaaggagcgcctcaccggcgagaaggacacgctggggctc
tatctgaccggccatcccatcgatgagtatgagggtgagctcaagcgcttcatcaatgca
cgcatcagtgacctcaagccgtcgcgtgagccgcagcgcatcgccgggctggtgatcgcc
atgcgcaccatgaagtccaagcgaggcgacaccatggccttcgtgaccctggatgaccgc
accggacgcatcgaggcctcgatgttcggtgagctctacgatcaggtgcgcaacaagctg
gtacctgacagcgtggtgatcgtcgagggcgaggtcagccaggatgactattccggtggt
ctgcgtctgcgcggcaaggacgtcacgccgatcatcgatgcgcgggcgcgcttcggtgag
gcggtcgagatgagcatcgccgccgaggacatcggcggtcgcttcacccagcagctgacc
accttgctgacgccgcatctggccagcgaaggcctgccgatgcgcctgcgttatcgcaat
gccgcggcggaggcctggctggagctgggcgagcaatggcgcgttgcgcccagtgatgag
ttgttgatccagctgggtgaggtggaaggccagcgcggtgtgcgcctcaagtaccgtgac
tga
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