Cobetia sp. AM6: CLAM6_32150
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Entry
CLAM6_32150 CDS
T08724
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03410
Base excision repair
cobe03430
Mismatch repair
cobe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLAM6_32150 (recJ)
03430 Mismatch repair
CLAM6_32150 (recJ)
03440 Homologous recombination
CLAM6_32150 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_32150 (recJ)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLAM6_32150 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLAM6_32150 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLAM6_32150 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
BBO57904
UniProt:
A0A5K7Y7C5
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All DBs
Position
complement(3893532..3895337)
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AA seq
601 aa
AA seq
DB search
MSRPDERTLAASIARVIQPRVRDERLYQQGIATGLSELQARVLAGRLTLESCKAPLEALV
TPALRHIEHPERLADGRRAAERIARAVAEGEHIGILTDYDVDGITSHVVMLRTLTELFDV
PYDRVHSLIGHRIHDGYGISLPLVERIMTLSPRPSLIVTADCGSSDEARLALLKEAGIEV
VVTDHHALPQEGPPASAYATVNPTRDDCAYPDATIAGCMVAWLTMSLTRNVLIEQGRLPS
DAPKLSPWLSYVALGTVADCVSLGGSAINRAVVNLGLTLINRMQEPCWRAMAERLGADSV
PFNAETLAFQMGPRINARSRLDDPYAALHFMLAREDDAAQRALEVLDQDNQSRKAIEAEM
VESARALALTSLREGHQVIVVHLEDGHPGVQGIVASRLVQQFGRPTVVLTPAAVPGMLTG
SGRSIEGLHLRDALQRAHDLAPQCLPRFGGHRGAAGVGLPLTEKDTFTRALQQAAAEQLG
ERALNPLILSDGELVEGQLSLETLDELERLAPFGREFEAPLFEGSFLVESLRPVGADGTH
LSLELSLGRTRLKAIWFRALSPGESPAFGVGASLKCAYKLSRNRWRGRESLQLMLEHAVP
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtccggacgagcgcacgcttgcggccagcattgcgcgggtcattcagccgcgc
gtgcgtgacgagcgtctctatcagcagggcatcgcgaccgggctcagcgaattgcaggca
cgtgtgctggcaggacgcctgacgctggagagctgcaaggcgcccctggaggcgctggtc
acgccggcgctccggcatatcgagcatcccgaacggctggccgatggccggcgcgcggca
gagcgcatcgcgcgcgccgtcgccgagggggagcatatcggcatcctcaccgactatgac
gtggatggcatcacctcgcatgtggtgatgttgcgcacgctgaccgagctgttcgatgtg
ccctacgaccgcgtgcacagtctgatcggccatcgcatccatgatggttatggcatcagt
ctgccgctggtcgagcgcatcatgacgttgtcaccgcgtccgtctctgatcgtgaccgcg
gactgcggctccagtgatgaggcgcgtctggcgttgctcaaggaggcgggaatagaggtc
gtggtgacggatcaccatgcgttgcctcaggaagggccgccggcttccgcctacgcgacc
gtcaatccgacacgagatgactgcgcctatcccgatgcgaccattgccggctgcatggtc
gcctggctgaccatgtcattgacccgtaacgtcttgatcgaacagggcaggttgccgagc
gatgcccccaagctgtcgccgtggctgtcgtatgtggcgctggggacggtggcggactgt
gtgtcactgggggggagtgcgatcaaccgcgcggtggtcaatctgggcctcacgttgatc
aaccgcatgcaggagccctgctggcgcgcgatggcagagcggctcggggcggatagcgtg
cccttcaatgccgagacgctggccttccagatggggccgcgtatcaatgcccgctcgcgt
ctggatgacccgtacgccgcgctgcacttcatgttggcgcgggaagatgacgcggcgcag
cgtgcgctggaagtgctcgatcaggacaaccagtcccgcaaggcgatcgaagccgagatg
gtcgagtcggcgcgtgccctggcgctcacctccttgcgggaaggacatcaggtgatcgtg
gtccacctggaggatggtcatcccggggtgcagggcattgtcgcttcgcgtctggtgcag
cagtttgggcgaccgaccgttgtgctgacaccagccgcggtgcccggcatgttgacgggc
tccgggcgctccatcgaaggattgcacctgcgggatgcgctgcagcgcgcccatgatctc
gcgccgcagtgcctgccgcgcttcggtgggcatcgcggcgccgccggcgtgggcttgccg
ctgacggaaaaggataccttcactcgtgccctgcaacaggcagccgcggagcagttgggg
gagagggcgctcaatcccttgattctcagcgatggtgagctggtggaagggcagttgagt
ctggagacgctggatgagctcgagcgtctggcgcccttcgggcgtgagttcgaggcgcct
ctcttcgagggcagcttcctggtcgagagcctcaggccggtaggcgctgatggcacgcac
ctgtcattggaactctcgctcgggcgtacgcgcctcaaggcgatctggttccgtgcgctg
tcaccgggggaatcaccggcatttggtgtgggggcctctctgaagtgtgcttacaagttg
tcgcgcaatcgctggcgggggagagagtcactgcagttgatgctggagcacgcagtgcct
gcatga
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