Cobetia sp. AM6: CLAM6_33050
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Entry
CLAM6_33050 CDS
T08724
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
cobe
Cobetia sp. AM6
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobe03021
]
CLAM6_33050 (rapA)
Transcription machinery [BR:
cobe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CLAM6_33050 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
SNF2-rel_dom
Tudor_RapA
Helicase_C
ResIII
DEAD
Flavi_DEAD
Helicase_RecD
Cas3-like_C_2
Sas-6_C_CC
Motif
Other DBs
NCBI-ProteinID:
BBO57994
UniProt:
A0A5K7Y7K1
LinkDB
All DBs
Position
3997854..4000796
Genome browser
AA seq
980 aa
AA seq
DB search
MSDFIPGQRWISDGEADLGLGTILNVDFRTVTVLFAASEETRTYSLREAPLTRVAFGNGD
RIQSDDGEWLIVDDFKEVRGQIVYICERSGEHAGELIELPEARLNDKMQFNQARDRLLTG
QVDRNDWFDLRYRTLRHFHRVEQSPALGLSGPKVDLVPHQLYIADEVSRRHAPRVLLADE
VGLGKTIEAGLILHRLLLSGRASRALILVPASLTHQWLVEMLRRFALDVSLLDEEQCKAY
GTRNPFEGNQIILASQDWLFANPSRQVQAAACDWDMLIVDEAHHLDWSEDKVGPGYACVE
SLARQTAGVLLLTATPEQMGLESHFARLRLLDPERYHDIERFKAEEQGYVAVASAIDALE
ALPADQSGLDSLASVLDDSDSRALLDTLMDSDADDAQRDSARRQLRDQLLDRHGTGRVMF
RNSRTHVAGFPERRLHVHELELPSSYRRVVRKLERDEDYLDDLLIETGMNHPEVVLFLDE
MYRALPDDRMNAEPWWQIDPRVMWLLETLTDLGNEKALVICHTADTARELSEGLRVLGGV
HAPVFHEGMSLVERDRAAAAFASEEEGVQLLVCSEIGSEGRNFQFCHHLVMFDLPVHPDQ
LEQRIGRLDRIGQQFPIEIHVPVFEGSPGAQLLRWYRDGMDAFSAPHGIGSELYAQFGDE
LEEALLDSEEIDSIIEQTRERFDALQEERQSGRNRLLELNACRHERAEEVIAAIETLDND
KALPGYLERAFDIFGIESRDLGDGITYLAPGPHMLDGLPGLVKGEEGFSVTSDRATALSR
EDVQHLSWEHPLVREMLVRILDGSMGNTALALLKHPAIPGGRLMTEVVFRTQSTAPRGLR
LGRFLPPTAIRVLLDETGSNLSDKVSFGGLAKNLKPVKKAVARDLIKQSHATLRKLMSDA
EQEAERELPTIVEQAQQQMREQLSAELARLEALASHNPAVREEELEALRQERAALDGAIE
TTRLRLDSVRVIVTVDAHER
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacttcattcccggtcagcgctggatcagtgacggcgaggctgatctcggcctt
ggcaccatcctcaatgtcgacttccgcaccgtcaccgtgctctttgccgccagcgaagaa
acccgcacctacagtctgcgcgaagcgccccttacccgggtggccttcggcaatggcgac
cgcatccagtccgacgatggcgaatggctgatcgtcgatgacttcaaggaagtgcgcggc
cagatcgtctacatctgtgagcgcagcggcgagcatgccggcgagctcatcgagcttccc
gaagcccgcctgaacgacaagatgcagttcaatcaggcgcgtgaccgcctgctgaccggc
caggtcgaccgcaatgactggttcgacctgcgctaccgcaccctgcgccacttccatcgt
gtcgagcagagcccggcgctgggcctgtccggccccaaggtcgatctggtgccgcaccag
ctgtacatcgccgatgaagtctcgcgccgtcacgcgccacgggtactgctggccgatgaa
gtcggcctcggcaagaccatcgaagccggtctgatcctgcatcgcctgctgctcagcggc
cgcgccagccgagcgctgatcctggtaccggcgagcctgacccaccagtggctggtcgag
atgctgcgccgcttcgcgctggatgtctcgctgctcgacgaggaacagtgcaaggcctac
ggcacacgcaatcccttcgaaggcaaccagatcattctggccagccaggactggctgttc
gccaacccgtcgcgtcaggtccaggcagccgcctgcgattgggacatgctgatcgtcgat
gaggcccaccacctcgactggagcgaagacaaggtcggtccgggctacgcctgtgtcgaa
tccctcgctcgccagaccgccggtgtgctgctgctgaccgccacgccggagcagatgggg
ctcgagagccatttcgcgcgcctgcgtctgctcgacccggagcgctatcacgacatcgag
cgcttcaaggccgaggagcagggctatgtggccgtcgccagcgccatcgacgccctggaa
gcgctgcccgccgaccagtccggcctcgacagcctcgccagcgtgctggatgacagcgac
agccgcgccctgctcgacaccctgatggacagcgatgccgacgatgcccagcgcgacagc
gcgcgtcgccagctgcgcgaccagctgctcgaccgccacggcaccggccgcgtgatgttc
cgcaactcacgcacccatgtcgccggcttccccgagcgtcgtctgcacgtccacgagctg
gagctgccctcctcctaccgtcgcgtggtgcgcaagctggagcgtgacgaggactacctc
gatgacctgctgatcgagaccggcatgaaccaccccgaggtggtgctgttcctcgacgag
atgtatcgcgccctgcccgatgaccgcatgaacgcggagccctggtggcagatcgacccg
cgcgtcatgtggctgctggaaaccctgaccgacctcggcaacgagaaggcgctggtgatc
tgccataccgccgataccgcgcgtgagctgtccgaaggcctgcgcgtgctgggcggcgtg
catgcaccggtcttccatgagggcatgagcctggtcgagcgcgaccgtgccgccgcggca
ttcgcctccgaagaggaaggcgtgcagctgctggtgtgctcggaaatcggctcggaaggt
cgcaacttccagttctgccaccacctggtgatgttcgacctgccggtacacccggaccag
ctcgaacagcgcatcgggcgtctggaccgcatcggtcagcagttcccgatcgagattcac
gtgccggtcttcgaaggctcgccgggcgcccagctgctgcgctggtaccgtgacggcatg
gatgccttcagcgcgccgcacggcatcggcagcgagctctacgcccagttcggcgacgag
ctggaagaagccctgctcgacagcgaagagatcgacagcatcatcgagcagacccgcgag
cgcttcgacgccctgcaggaagagcgtcagtccggccgcaaccgcctgctggaactcaat
gcctgccgtcacgagcgcgccgaggaagtcatcgccgccatcgagacgctggacaacgac
aaggcgctgcccggctatctggagcgcgccttcgacatcttcggcatcgagagccgggac
ctcggcgacggcatcacctatctggcaccaggcccgcacatgctcgacggtctgccgggg
ctggtgaagggcgaggaaggcttcagcgtcaccagtgaccgcgccaccgcgctgtcacgc
gaagacgtgcagcatctgtcgtgggagcacccgctggtacgcgagatgctggtccgcatc
ctggacggctcgatgggcaacaccgcgctggcgctgctcaagcacccggcgattcccggt
ggccgcttgatgacggaagtggtgttccgcacccagtccaccgcgccgcgcggcctgcgc
ctgggccgcttcctgccgccgaccgccatccgcgtgctgctggatgaaaccggcagcaac
ctgtccgacaaggtgtccttcggcggactggcaaagaacctcaagccggtcaagaaggcg
gtcgcgcgtgacctgatcaagcagagccacgccacgctgcgcaagctgatgagcgatgcc
gagcaggaagccgagcgcgaactgccgaccatcgtcgagcaggcccagcagcagatgcgc
gagcagctcagtgccgaactggcgcgcctggaagccctggccagccacaacccggccgtg
cgcgaggaagagctcgaagcgctgcgtcaggagcgtgccgcgctggatggcgccatcgag
accacccgcctgcgtctggacagcgtgcgcgtcatcgtcaccgtggatgcccacgagcgt
tga
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