Cobetia sp. AM6: CLAM6_33590
Help
Entry
CLAM6_33590 CDS
T08724
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLAM6_33590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobe03021
]
CLAM6_33590 (rpoC)
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_33590 (rpoC)
Enzymes [BR:
cobe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLAM6_33590 (rpoC)
Transcription machinery [BR:
cobe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLAM6_33590 (rpoC)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLAM6_33590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl
Apocytochr_F_C
DUF7129
Motif
Other DBs
NCBI-ProteinID:
BBO58048
UniProt:
A0A5K7YAA2
LinkDB
All DBs
Position
complement(4045315..4049556)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMAHIELASPVAHIWFLKSL
PSRIGMLLDMTLRDIERVLYFESFVVIDPGMTTLEKGHLLNDEQYFEALEEFGDDFDARM
GAEAIKALLEDIELEEEVERLREEIPQTNSETKIKKLSKRLKLLEAFYYSGNKPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYAKLQASGHASTIKAAKKMVEREAPEVWDFLADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREKIGAKGEGMAFANLGEVERAFGTH
SAHLHAMVKVRLTETLKDEESGELYEKTSLHDTTIGRALLFRILPKGMPFELINQVMKKK
AISGLINEAYRRVGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKKVIIDAAED
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDRVAKEMMAGISKETVVNWKGEVVNDEDG
KPMEQDSFNSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITEADCGTQEGLILHPVIEGGDI
IVPLSQRVLGRVVAQDVIDPVSDEVLIARGTLLDEAWCAQLDTMGVDEIIVRTTIGCETV
HGVCSACYGRDLARGHQVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQ
VKHGGSVRLHNIKSVERADGKLIVVSRSSALAVADDHGREREFYKLPYGAELSVRDGDPV
ASGQSVAKWDPHTHPIVAEVAGQVQFTDMEDGQTINRTTDEMTGLSSIEVIESASRPSAA
RDKRPMIMLVDGSGKHVTLPGSNTPVQYLLPGNAVVSAENGAAVGVGDVIARIPMEASGN
KDITGGLPRVADLFEARRPKEPAILAEISGTVTFGKETKGKRRLTITPVEGDPFELLIPK
WRQISVFEGETVEKGEVISDGPSNPHDILRLLGVAEMTKYITTEVQEVYRLQGVGINDKH
IEVIVRQMLRKVEITDSGDSTFITGDQVEYARVVEENMRLEADGKFPAKFDRILLGITKA
SLATESFISAASFQETTRVLTEASVTGKRDYLRGLKENVVVGRLIPAGTGLAYHDERRRR
RDGLPLAPAPSAQDVEQELGAQLTALDADDDDL
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagttctcaaatcgcaggcgcagtccgaagaattcgacgccatc
aagattaccctggcgtctccggacatgattcgctcgtggtcttttggtgaagtgaagaag
cctgaaaccatcaactaccggacattcaagccggaacgtgatggtcttttctgtgccaag
atctttggcccggtgaaggactacgagtgcctgtgtggcaagtacaagcggatgaagcat
cgcggcatcatctgtgagaagtgtggcgttgaagtgaccaaggcggcagtgcgtcgtgag
cgtatggctcacatcgaactggcgagcccggtcgcgcatatctggttcctgaagtctctg
ccgtcccgtatcggcatgctgctcgacatgactctgcgtgatatcgagcgcgtgctgtac
ttcgaaagcttcgtggtcatcgacccgggcatgacgaccctcgagaagggtcatctgctc
aacgatgagcagtacttcgaagcgctggaagaattcggtgatgatttcgacgcccgcatg
ggtgccgaggccatcaaggcgctgctcgaggacatcgagctggaagaagaggtcgagcgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctcaagctgctggaagccttctactattccggcaacaagccgggctggatgatcatggaa
gtgctgccagtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgcttc
gcgacctcggatctgaacgatctgtatcgtcgtgtgatcaaccgcaacaaccgcctcaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgtggatgcactgctcgacaacggtcgccgcggtcgcgccatcaccggttccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactattccggtcgttccgtcatcaccgtcggtccgacc
ctgcgtctgcaccagtgtggtctgccgaagaagatggcgcttgagctgttcaagccgttc
atctacgccaagctgcaggcctccggtcacgccagcaccatcaaggccgccaagaagatg
gtcgagcgcgaagccccggaagtctgggatttcctcgccgacgtcatccgcgagcacccg
gtgctgctgaaccgtgccccgactctgcaccgtctgggtatccaggcgttcgagccgctg
ctgatcgaaggcaaggccatccaactgcacccgctggtctgcgctgcgtacaacgccgac
tttgatggtgaccagatggctgtccacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcccaggacgtcgtgctgggtctgtactacatgacccgcgagaagatcggtgcc
aagggtgagggcatggccttcgcgaacctgggtgaagtcgagcgtgccttcggcacgcac
agcgctcacctgcacgcgatggtcaaggtccgtctgaccgagacgctcaaggacgaagag
tccggcgagctgtacgagaagacgtccctgcacgacaccaccatcggtcgcgcactgctg
ttccgcattctgccgaagggcatgccgttcgagctgatcaaccaggtgatgaagaagaaa
gccatctccggtctgatcaacgaggcgtaccgtcgtgtcggtctgaaggacaccgtcatc
ttcgctgaccagctgatgtacaccggcttccgtctcgcgacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccggacgcgaagaaggtcatcatcgacgcggccgaagac
gaagtgaaagagatcgaagaccagttctcctccggtctcgtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaacgaccgtgtcgccaaggagatgatggca
ggtatctcgaaagagaccgtcgtcaactggaaaggcgaagtggtcaatgacgaagacggc
aagccgatggagcaggactccttcaacagcgtcttcatcatggccgactccggtgcgcgt
ggttccgccgcacagattcgtcagctggctggtatgcgtggcctgatggccaagccggat
ggctcgatcatcgagacgccgatcaccgccaacttccgtgaaggtctgaacgtactccag
tacttcatctccacgcacggtgcccgtaagggtctggcggatacggcactgaagaccgcc
aactccggttacctgacccgtcgtctggtcgatgttgcccaggatctggtcatcaccgaa
gcggattgcggcactcaggaaggtctgattctgcacccggtcatcgaaggcggcgacatc
atcgtcccgctgtcccagcgtgtgctgggtcgtgtcgtggcgcaggacgtgatcgatccg
gtctctgatgaggtcctgatcgcacgcggtacgctgctcgacgaagcctggtgtgcacag
ctcgataccatgggcgtcgatgagatcatcgtgcgtaccaccatcggttgtgaaaccgtg
cacggtgtctgctcggcctgttacggtcgtgacctggcgcgtggccatcaggtcaacgtc
ggtgaagccatcggtgtcatcgcggcacagtccatcggtgagccgggtacccagctgacc
atgcgtaccttccacatcggtggtgccgcttcgcgtgcctccgccgtggacagtgtccag
gtcaagcatggcggcagcgtgcgtctgcacaacatcaagtcggtcgaacgtgccgatggc
aagctgattgtcgtctcgcgttccagcgcactggcagtggcggatgaccacggccgtgag
cgcgaattctacaagctcccgtacggtgctgagctgtccgtgcgtgacggcgacccggtg
gcctctggtcagtccgtcgccaagtgggatccgcacactcacccgatcgtcgcggaagtc
gcgggtcaggtgcagttcacggacatggaagatggccagaccatcaaccgtaccactgac
gaaatgaccggtctgtcctccatcgaggtcatcgaaagtgcttcacgtccgtccgcggcc
cgtgacaagcgtccgatgatcatgctggtagacggtagcggcaagcacgtgacactgccg
ggctccaacacgccggtccagtacctgctgccgggcaatgccgtggtgtccgccgagaat
ggcgcggccgtcggcgtgggtgacgtcatcgcacgtatcccgatggaagcgtccggtaac
aaggacatcaccggtggtctgccgcgtgttgccgacctgttcgaagcacgtcgtccgaaa
gagccggccatcctggccgagatctccggcaccgtgaccttcggcaaggaaaccaaaggc
aagcgtcgtctgaccatcacgccggtggaaggtgatccgttcgagctgttgatcccgaaa
tggcgccagatcagcgtcttcgaaggtgaaacggtcgagaagggtgaagtcatctccgat
ggcccgagcaacccgcacgatatcctgcgtctgctcggcgtcgcggaaatgaccaagtac
atcaccaccgaagtccaggaggtctatcgcctccagggtgtcggcatcaacgacaagcac
atcgaagtcatcgtgcgtcagatgctgcgcaaggtcgagatcaccgattctggcgattcc
accttcatcacaggcgaccaggtggaatacgcccgcgtcgtcgaagaaaacatgcgtctc
gaggccgacggcaagttcccggccaagttcgatcgcatcctgctcggtatcaccaaggcg
agcctggcaactgaatcgttcatctccgcggcgtccttccaggaaaccacgcgagttctg
accgaggcatctgtcaccggcaagcgcgattatctccgtggtctgaaggagaatgtcgtg
gtcggtcgcctgattccggcgggtactggcctggcctatcacgacgagcgtcgccgccgt
cgcgatggcctgccgctcgcaccggccccgtcggcacaggacgtcgagcaggaattgggc
gctcagctcactgccctcgacgcggacgacgacgacctctga
DBGET
integrated database retrieval system
