Cobetia sp. AM6: CLAM6_33600
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Entry
CLAM6_33600 CDS
T08724
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLAM6_33600 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobe03021
]
CLAM6_33600 (rpoB)
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_33600 (rpoB)
Enzymes [BR:
cobe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLAM6_33600 (rpoB)
Transcription machinery [BR:
cobe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLAM6_33600 (rpoB)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLAM6_33600 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BBO58049
LinkDB
All DBs
Position
complement(4049645..4053721)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYHDFLQQDRAPEQRLEVGLHAAFKSV
FPIASFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLMIYDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVYVRIDRRRKLPASVLLRAMGMTSEEILGTFFDTTMYHIERSG
FSVELVPARLRGETAAFDIKDADGSVIVEEGRRITQKHVRQMEASGLERLEVPMDYLYGK
VLAKDQIDPATGELVCESNSEITPELLEKMAQAKITQFEVIYTNDLDCGPFVSDTLKLDT
TRNQLEALVEIYRMMRPGEPPTKDAAESLFQNLFFSEDRYDLSGVGRMKFNRRLRRESDT
GSGVLDQDDILTVMKELISIRNGNGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSKTNSYGFLETPYRKVV
DCQVTDDVVDLSAIEEGDFIIAQASATVDENGRLVDDLVQVRHRGETTFMAPEKVTMMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDAKRIVVRVREEEIIGGEAGVDIYNLTKYVRSNQNTCQNQRPIVRPGD
EVAIGDILADGPSVDMGDLALGQNMRLAFMPWNGFNFEDSILFSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGESALSKLDESGVVYIGAELNPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKATVIDVQVFTRDGVEKDQRALSIEQMQLAE
VRKDLQETYRIAEEATFERMQRNLVGQAVNGGPKLKKGDVLTDDYLEALPRQEWFKLRLQ
DESLNELLAQADEQLEIRRREMDERFEDKKRKLTQGDDLAPGVLKIVKVYVAVKRRIQPG
DKMAGRHGNKGVISAIMPVEDMPFDGNGESVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEHMLREERAEQVKQIREFLDKVYNTVGGRQEDLSVLSDDEIITMAHNLKKGVPMA
TPVFDGAKEHEIKQLLTLAGIPDSGQMDLYDGRTGEKFDRKVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKSIVDGDHTMQAGMPESFNVLVKEIRSLGIDMELEG
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgcatccgcaaggattttggcaaactgccccaa
gtgatggatgtgccttacctgctggccatccagcttgattcctaccacgactttctccag
caggacagggcgccagaacagcgcctggaagtcggccttcacgctgccttcaagtccgtg
ttcccgattgccagtttctctggcaacgcagcgctcgagtatgtcagctaccgcttcggt
acgccggcgttcgacgtcaaggaatgtcagctgcgcggagtcacttactctgcaccgctg
cgcgtgaaagtgcgcctgatgatctatgacaaggaatcgtcaaacaaggcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgacagagaacggtaccttc
gtcatcaatggtaccgagcgtgtcatcgtgtcacagctgcatcgctcgccgggtgtgttc
ttcgaccacgacaagggcaagagccactcgtccggcaagctgctgtactccgcacgtgtg
attccttaccgcggttcctggttggacttcgagtttgatccgaaggacaacgtctacgtc
cgtatcgaccgtcgtcgcaagctgccggcttccgttctgctgcgtgccatgggcatgacc
agcgaagagattctcggtacgttcttcgacaccacgatgtaccacatcgagcgcagcggc
ttctccgttgagctggtgccggcacgtctgcgtggcgagaccgccgccttcgacatcaag
gatgccgacggtagcgtgatcgtggaggaaggtcgtcgtattacacagaagcacgtccgt
cagatggaagcctccggcctcgagcgtctcgaagtgccgatggactacctgtacggcaag
gtgctggccaaggatcagatcgatccggccactggtgagctggtctgcgaaagcaacagc
gagattactccggaactgctggagaagatggctcaggccaagatcacccagttcgaagtc
atctacaccaacgacctggattgcggtccgttcgtgtccgataccctgaaactggatacc
acgcgtaaccagctcgaggcgttggtcgagatctaccgcatgatgcgtccgggcgagccg
cccaccaaggatgcagcagagtcactgttccagaacctgttcttcagcgaagaccgctac
gacctgtcgggcgtgggccgcatgaagttcaaccgtcgcctgcgtcgcgaaagcgatacc
ggcagcggcgtgctcgatcaggacgatatcctgaccgtcatgaaggagctgatcagcatc
cgtaacggcaatggcgatgtcgatgacatcgaccacctgggcaaccgtcgtattcgctct
gtgggcgaaatggcggaaaaccagttccgtgtcggcttggtccgcgtcgagcgtgcggtc
aaggagcgtctgtccatggccgagagtgaaggcctgatgccgcaggatctcatcaacgcc
aagccggttgcggcggcggtgaaggaattcttcggttccagccagctctcccagttcatg
gatcagaacaacccgctgtccgaagtgacgcacaagcgccgtgtctccgcgcttggcccg
ggtggtctgacccgtgagcgcgccggcttcgaagttcgtgacgttcacgccacgcactac
ggccgtctgtgcccgatcgagacgccggaaggcccgaacatcggtctgatcaactcgctg
gcgacctactccaagaccaacagctatggcttcctcgagacgccgtaccgcaaggtcgtg
gattgtcaggtcaccgacgatgtcgtcgatctgtccgcgatcgaggaaggcgatttcatc
atcgcccaggcctccgcgaccgtcgacgagaacggccgtctggtcgacgacctggttcag
gttcgtcaccgtggcgagaccaccttcatggcgccggaaaaggtcaccatgatggacgtg
tctccgcgtcaggtcgtctctgtcgctgccgcactgatcccgttcctcgagcacgatgat
gccaaccgcgccttgatgggtgcgaacatgcagcgtcaggccgttccgactctgaaggct
gacaagccgctggtcggtaccggcatggagcgcttcgtggcgcgtgactccggcgtctgc
gccgtggcacgtcgtggcggcgtcatcgattccgtcgatgccaagcgcatcgtcgtacgt
gtgcgggaagaagagatcatcggcggtgaagccggcgttgatatctacaacctgaccaag
tacgtgcgctcgaaccagaatacctgtcagaaccagcgcccgatcgtgcgtcctggcgac
gaagtcgccatcggcgacatcctggccgacggcccgtccgtcgacatgggtgatctggcc
ctgggtcagaacatgcgtctggcgttcatgccctggaacggcttcaacttcgaggattcc
atcctgttctcggagcgtgtggtgcaggaagatcgcttcaccaccatccacatccaggaa
ctgacctgtgtcgcgcgtgacaccaagctcgggccggaagaaatcacttccgatatcccg
aatgtcggcgaatccgcactctccaagctggatgagtccggtgtcgtctacatcggtgcc
gagctgaacccgggcgacatcctggtcggcaaggtcacgccgaagggcgagacccagctg
acgccggaagagaagctgttgcgtgccatcttcggcgagaaggcgtccgacgttaaggac
acctctctgcgtgccccgaccggcatgaaggccaccgtcatcgacgttcaggtcttcacc
cgtgacggcgtcgagaaggatcagcgtgcgctctccatcgagcagatgcagctggccgag
gtccgcaaggacctgcaggaaacctaccgcatcgcggaagaggcgaccttcgagcgtatg
cagcgcaacctggtcggtcaggccgtcaacggtggtccgaagctcaagaagggcgacgtg
ctgaccgatgactacctggaagcactgccgcgccaggagtggttcaagctgcgtctgcag
gacgagtctctcaacgaactgctggctcaggccgatgagcagctcgagatccgtcgtcgc
gagatggacgagcgcttcgaagacaagaagcgcaagctcacccagggtgatgatctggca
ccgggcgtgctcaagatcgtcaaggtgtacgtcgccgtgaagcgtcgtatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtcatctccgcgatcatgccggtcgaa
gacatgccgttcgatggcaatggcgagtcggttgacgtcgtgctgaacccgctgggtgta
ccgtcgcgcatgaacgtcggtcagatcctcgagacccacctcggcatggccgcgcgtggt
ctgggcgtgaagatcgagcacatgctgcgcgaagaacgtgccgagcaggtcaagcagatc
cgcgaattcctcgacaaggtgtacaacaccgtcggcggtcgccaggaagacctctccgtg
ctcagcgatgatgaaatcatcaccatggcgcacaacctgaagaagggcgtgccgatggca
acgccggtcttcgatggcgccaaggaacacgagatcaagcagttgctcacgctggccggt
atccctgattccggacagatggacctctacgatggccgcaccggcgagaagttcgatcgc
aaggtgaccgtcggttacatgtacatgctcaagctcaaccacctggtggatgacaagatg
catgcgcgttcgaccggctcctactccctcgtcacgcagcagccgctgggtggtaaggcg
cagtttggtggtcagcgcttcggtgagatggaggtctgggccctcgaggcgtacggcgct
gcctacaccctccaggagatgctcacggtcaagtccgatgacgtggaaggccgtaccaag
atgtacaagagcatcgtagatggcgatcacaccatgcaggcgggcatgcccgaatccttc
aacgtgctggtgaaggaaatccgctcgctgggtatcgacatggagctggaaggctga
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