Cobetia sp. AM6: CLAM6_34500
Help
Entry
CLAM6_34500 CDS
T08724
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cobe
Cobetia sp. AM6
Pathway
cobe03420
Nucleotide excision repair
cobe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLAM6_34500 (uvrD)
03430 Mismatch repair
CLAM6_34500 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobe03400
]
CLAM6_34500 (uvrD)
Enzymes [BR:
cobe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLAM6_34500 (uvrD)
DNA repair and recombination proteins [BR:
cobe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLAM6_34500 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CLAM6_34500 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Pox_A32
Motif
Other DBs
NCBI-ProteinID:
BBO58139
UniProt:
A0A5K7YDW3
LinkDB
All DBs
Position
complement(4171213..4173435)
Genome browser
AA seq
740 aa
AA seq
DB search
MSESPLLDHLNTHQREAVSAPPGNMLVLAGAGSGKTRVLVHRIAWLMDQYQFSPYAILSV
TFTNKASREMRTRLEALNGSSLRHMWVGTFHSISHRLLRTHWQEARLPEHFQIIDSDDQL
RMVKRLLKEHNVDDERWPPKQVQYFIAGCKEEGLRAHQVQTHGDAYMGKMVEMYELYQLA
CERGGLVDFGELLLRSLELLRDTPHLLAHYRERFAHLLVDEFQDTNTLQYAWLKLLAGDR
ECMTVVGDDDQSIYGWRGARVENIQRFTEEFANTRVVRLEQNYRSSSAILEAANALISHN
GGRMGKELWTDSGRGERIRVYAGFNDIDESRYIADTIRELVNEHGYSRDEIAILYRSNAQ
SRVLEETLIRQGMPYRIYGGQRFYERLEIKNALAYLRLMNNREDDAALERVINVPARGIG
MRTVEQLRERARYGNLTMWQAMSDAVSDGALKGRAATAVRAFADIIDGLDNDTAGMALHE
LVEHVIHVSGLREHHAAEKGEKGQARLENLSELVNACRAFSQGERMDPEAPSEGAEALEP
FLAEAALDAGDHEAAEGEECVQMMTLHSAKGLEFPVVFVAGVEEGLFPHKMSLEEPGRLE
EERRLCYVGVTRAMQRLYLTYAELRRMHGKETFQRPSRFLRELPEELMEEVRLRGQVSRP
VSTQRATPNRRPSGPRQESVEANGDMPALSLGSLVRHPLFGEGVVINAEGQGERARVQIS
FEGEGDKWLVLGFAKLEVLS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatcgcccctcctcgatcacctcaacacgcatcagcgtgaggccgtgtccgcg
ccgccgggcaacatgctggtactggcgggggccggttccggcaagacccgcgtgctggtt
caccgcatcgcctggttgatggaccaataccagttctcgccctacgccatcctgtcggtg
accttcaccaacaaggcctcgcgggagatgcgcacgcgtctcgaggcgctcaatggcagc
agcctgcgccacatgtgggtcggcaccttccactccatcagtcaccgtctgctgcgcacc
cactggcaggaggcgcgcctgcccgagcacttccagatcatcgacagcgatgaccagctg
cgcatggtcaagcggctgctcaaggagcacaacgtcgatgacgagcgctggccgcccaag
caggtccagtacttcatcgccggctgcaaggaggaaggtctgcgcgcccatcaggtgcag
acccatggcgatgcctacatgggcaagatggtcgagatgtatgagctctatcagctcgcc
tgtgaacgcggcggcctggtcgatttcggtgagctgctgctgcgctcgctggagctgctg
cgcgatacgccgcacctgctggcgcattaccgcgagcgcttcgcccacctgctggtcgac
gagttccaggataccaacaccctgcagtacgcctggctgaagctgctggccggtgatcgc
gagtgcatgaccgtggtcggcgatgatgaccagtccatctacggctggcgtggcgcgcgg
gtcgagaacatccagcgcttcaccgaggagttcgccaacacccgcgtggtgcgtctggag
cagaactaccgctcctccagcgccattctggaggccgccaacgccctgatcagccacaac
ggcgggcgcatgggcaaggagctgtggaccgacagcggtcgcggcgagcgcatacgtgtc
tacgccggcttcaatgacatcgacgagtcgcgctatatcgccgataccatccgtgaactg
gtcaatgagcatggctacagccgcgacgagatcgcgatcctgtatcgctccaatgcccag
tcacgcgtgctggaggagacgctgatccgccagggcatgccgtatcgcatctatggcggc
cagcgcttctacgagcgtctcgagatcaagaacgcgcttgcctatctgcgtctgatgaac
aaccgcgaggacgatgccgccctggagcgcgtgatcaacgtgccggcgcgtggcatcggc
atgcgtaccgtcgagcagctgcgcgagcgcgcacgctacggcaacctgaccatgtggcag
gcgatgagcgatgcggtctccgatggcgccctcaagggacgcgccgccaccgcagtgcgt
gccttcgccgacatcatcgatggcctcgacaacgacaccgccggcatggcgctgcatgag
ctggtcgagcacgtcatccatgtctccggcctgcgtgagcatcacgccgccgagaagggc
gagaagggccaggcgcgcctcgagaacctctcggagctggtcaacgcctgccgcgccttc
agtcagggcgagcgcatggacccggaagcccccagcgaaggggccgaggcgctggagccc
ttcctcgccgaagccgcgctggatgccggcgatcacgaagccgccgaaggcgaggaatgc
gtgcagatgatgacgctgcactccgccaaggggctcgaattcccggtggtattcgtcgcc
ggggtcgaggaggggctgttcccgcacaagatgtcgctggaggagccggggcgtctcgag
gaagagcgtcgcctgtgctacgtcggtgtcacccgtgccatgcagcgcctctacctgacc
tacgccgagctgcgtcgcatgcacggcaaggagaccttccagcggccgtcgcgcttcctg
cgtgaattgccggaagagctgatggaagaggtgcgtctgcgtggccaggtctcgcgtccg
gtctcgacccagcgcgccacgccgaatcgccgtccttccggtccgcgtcaggagagtgtc
gaggccaatggcgacatgccggcactctcgctcggcagcctggtacggcatccgctgttc
ggggaaggcgtggtcatcaatgccgaaggccagggcgagcgcgcgcgcgtgcagatcagc
ttcgagggcgaaggcgacaagtggctggtgctgggctttgccaagctggaagtgctgagc
tga
DBGET
integrated database retrieval system
