Cardiocondyla obscurior: 139101232
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Entry
139101232 CDS
T10704
Symbol
Ssl1
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03022
Basal transcription factors
cobs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139101232 (Ssl1)
09124 Replication and repair
03420 Nucleotide excision repair
139101232 (Ssl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobs03021
]
139101232 (Ssl1)
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139101232 (Ssl1)
Transcription machinery [BR:
cobs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139101232 (Ssl1)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139101232 (Ssl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Motif
Other DBs
NCBI-GeneID:
139101232
NCBI-ProteinID:
XP_070510345
LinkDB
All DBs
Position
LG03:complement(4525436..4528409)
Genome browser
AA seq
401 aa
AA seq
DB search
MAEDESEEKEYRWETGYEKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQGARLGMM
RHLYIILDASESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKIS
DLAGNSKKHIKELQTLQQTAVGGEPSLQNSLELATKLLKLLPSHASKEILVIIGALTTCD
PGDLNETIRNMKSDGIRCSVIGLAAELYICKRMANVTGGEHSVALDDKHYKEQLNAHIDP
PPAAMRLDAALVKMGFPHHALHSSAPDTSMTVCMCHAQDSDETVKLMTTGYLCPQCLSKH
CELPVECRACGLTLASAPHLARSYHYLFPVDPFKEIAPESDHSFCFGCQKAFTQKDKKIY
ICGKCNQTFCLDCEIFIHDVLHTCPGCAINPETYRKSTDRS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacgaatctgaggaaaaggaataccgttgggaaactggttacgagaaaaca
tgggaagcaatcaaggaagatgaccatggcttactggaagcttcagttgcagacattatt
cacaatgctaagagaaaacgtcagttggaaagaaaacaaggtgctagattaggaatgatg
agacatctctatattatcttggatgcttctgagtcaatgtcaaatcaagatttgaagcca
actcgttttttatgttctttaaagcttctagaagactttattgaggagtttttctatcaa
aatcctataagtcaattaggtgtaattataactagaaataaaagagctgagaagattagt
gatctggctggtaattcaaagaagcatattaaagagttgcaaacattgcaacaaactgca
gtgggtggtgaaccttctctacaaaattctttagaattagctacaaagttattgaaatta
ttgccatctcatgccagcaaagaaatattagttatcataggagctttgactacatgtgat
cctggagacctcaacgaaacaataagaaatatgaaatcggacggtattaggtgtagtgta
ataggattggccgctgaattatacatttgcaagcgaatggcaaatgttactggtggtgaa
cacagcgttgctctcgatgataaacactacaaagagcaattaaacgcacatatagatcct
ccgcccgctgcaatgcgattagatgcagcgcttgtaaaaatgggatttcctcatcatgct
ttacattcgagcgcgccagatacatctatgacagtgtgtatgtgtcacgcacaggattcc
gatgaaacggttaagctcatgactactggctatctctgtcctcaatgtctcagtaaacat
tgtgagctccctgtggaatgtagagcttgtggtcttactctagcatctgctccacattta
gcgcgatcatatcattatctatttccagttgatccttttaaagaaattgcgcccgaaagc
gatcattctttttgctttggttgccaaaaagctttcactcaaaaggataagaagatatat
atttgcggaaaatgtaatcaaacattttgtttagattgcgaaatatttatacacgacgta
ctgcacacatgccctggttgtgcaataaatcctgaaacgtatagaaaatctacagataga
tcctaa
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