Cardiocondyla obscurior: 139101249
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Entry
139101249 CDS
T10704
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cobs03009
]
139101249
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139101249
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
Helicases
139101249
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
CrAss_Ring_1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139101249
NCBI-ProteinID:
XP_070510389
LinkDB
All DBs
Position
LG01:complement(1185583..1189221)
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AA seq
773 aa
AA seq
DB search
MKNSDLVGFADPNAVSDDGEDDEIANIKKKVSKKSGGFQSMALSFPVLKGVLKRGYKIPT
PIQRKTIPLLLEGRDVVAMARTGSGKTACFLIPLFEKLKVRQAKTGARGLILSPTRELAL
QTLKFIKELGKFTGLKAAVILGGDSMDNQFSAIHGNPDIIVATPGRFLHICVEMDLQLKN
IEYIVFDEADRLFEMGFGEQIQEIVNRLPESRQTLLFSATLPKVLVDFAKAGLSDPVLVR
LDVESKIPEGLTLSFITCRPEEKLAVLLSLLKKIIKPESQTIVFAETMHHVEYIHQILDK
AGISNTFIYSNLDPSARKINAAKFQIGKVKVLIVTDVAARGIDIPHLDCVINFNFPAKSK
LFIHRVGRCARAGRAGTAYNIVSTDEYPYLLDLHLFLGRPLTIVPTAGTAENMESAVGKL
PQAMIEEELTELINWHNTSTDLINMQKVSNNAYQQYIRSRPGASAESVKRIKELRINEAG
ILPQYADIPHAAADIIARMKNYRPQGTIFEIGTKTNSTDYKVMKVKRTFHKENIHNFHKK
MEERKTDKINTASELSQKVDLPSSNAEEINAAFSTVVVPKKRSSDSLYKISKKKKRLTKR
DEEYYIPYSAPDKHTEEGLAVNTFATEADKAQMDLTADNEEARHLQTQLKKWDRKKKKMV
TVERDPKAKKIRTESGVWIPATYKTNRYNVWKEKSKIDENNSEDDSEEEPSQIKNLRTTA
NTHWARHNQKLKDKVKIRNELKRPEQVLKARQLLEKKRQKSGRRKGQKNRKKH
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacagtgatcttgtaggatttgctgacccgaatgcggtcagtgacgatggcgag
gacgatgaaatcgctaatattaaaaaaaaggtttctaagaaatctggagggtttcagtcc
atggctctaagttttccagtattaaagggagtcctcaaacgtggttacaaaatacccaca
ccaatacaaagaaagactataccattacttcttgaaggtagagatgtagtagcaatggct
aggactggtagtggaaagactgcttgctttttaattcctctgtttgaaaaactcaaagtg
agacaggcaaaaacgggtgcacgtggcttgatattatcacctacacgtgaattggcattg
cagactttaaaattcataaaggagttgggaaaatttacaggattaaaagcagcagtgata
ttaggtggagatagtatggataatcaatttagtgcaattcatggaaatcctgatattatt
gtagcaactcctggccgatttttacacatatgtgtagaaatggatctgcaattaaaaaat
attgagtacattgtttttgatgaagctgatagattatttgaaatgggttttggagaacag
atacaagaaattgtgaacagattacccgaatcacgccagacgttattattttctgccact
ttacctaaagtcctagtagattttgcaaaagctggtcttagtgatccagttctagttcgt
ttggatgttgagagtaaaatacctgaaggattaacgttatcttttattacatgtcgtcct
gaagaaaaattagcagtacttttgagtttattaaaaaaaattatcaagcccgagtcgcaa
acaattgtatttgcggaaactatgcatcacgtggaatatattcatcagatattggacaaa
gctggtatatctaacacttttatatactcgaatttggatccctccgcgcgtaaaatcaat
gcagctaaatttcaaattggtaaggtaaaagttctcatagtaacggatgttgctgctaga
ggaatagatataccacatttggactgtgtgattaattttaattttcctgcaaaatcgaaa
ctttttatacacagagtgggacgatgtgctcgagctggtcgtgctggaacagcgtataat
atcgttagcacggatgaatatccttatctcttagatctgcatcttttcctcggccggcct
ttaacaatagtgccgaccgcaggaactgctgaaaatatggaatccgccgtaggaaaatta
ccacaagctatgatagaagaagaattgacggaattaattaattggcacaatacttctact
gatttgataaatatgcaaaaagtatctaataatgcttatcaacaatacatcagatcacgg
ccaggtgcatcggcagaaagtgttaaaagaattaaagaacttcgcatcaatgaagccgga
attttaccccagtatgctgatattcctcatgcagctgcggatataatagcaaggatgaaa
aattatagaccacagggaacgatatttgaaattggtacgaagacaaactcgacagattat
aaagtaatgaaagtgaaacgaacgtttcacaaagagaatattcataattttcacaaaaaa
atggaggaacgtaaaaccgataaaatcaatacagcgtcagaattatctcaaaaagtcgat
ctgccgtctagtaacgcagaagaaattaatgctgcgtttagcacagtggtagttcctaag
aaaagaagtagtgatagtttatataaaatttcgaaaaagaaaaaacgtctaacaaaacga
gatgaagaatattatattccttattctgcaccagacaaacatacagaagaaggcctagcg
gttaatacatttgccactgaagctgataaagcccaaatggacttaacggcggataatgaa
gaggctcgacatctacaaactcaattgaaaaagtgggatagaaaaaagaagaaaatggtc
accgtcgaaagagatccaaaggctaaaaaaatacgcactgagtcgggtgtgtggatacct
gctacgtataaaacaaatcgctacaacgtgtggaaagagaagagcaagatcgatgagaat
aacagcgaggatgatagtgaagaagaaccttcacaaataaaaaatttacgaacgacagca
aatacgcattgggctcgacacaaccagaaactcaaggacaaagttaaaataaggaatgaa
ctgaagagacctgaacaagttttaaaggcacgccagttgctggaaaagaaacgtcagaag
agcggtagacgaaaaggccaaaagaatcgtaaaaaacattaa
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