Cardiocondyla obscurior: 139101503
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Entry
139101503 CDS
T10704
Symbol
Pcm
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03008
Ribosome biogenesis in eukaryotes
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139101503 (Pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
139101503 (Pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139101503 (Pcm)
03009 Ribosome biogenesis [BR:
cobs03009
]
139101503 (Pcm)
03016 Transfer RNA biogenesis [BR:
cobs03016
]
139101503 (Pcm)
03036 Chromosome and associated proteins [BR:
cobs03036
]
139101503 (Pcm)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139101503 (Pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
139101503 (Pcm)
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
RNases
139101503 (Pcm)
Transfer RNA biogenesis [BR:
cobs03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139101503 (Pcm)
Chromosome and associated proteins [BR:
cobs03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139101503 (Pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
139101503
NCBI-ProteinID:
XP_070510790
LinkDB
All DBs
Position
LG04:complement(6963482..6971670)
Genome browser
AA seq
1656 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEIVKEHQIPEFDYLYLDMNGIIHTCSHPTDDVCFRISEEMIF
KNIFHYIEILFNMIRPQKLFFMAIDGVAPRAKINQQRGRRFRAAKDAEVQEAKARSKGIP
IPTEKRFDSNCITPGTLFMSKLSEQLKCFIEHKISTNDEWKKCKILFSGSEVPGEGEHKI
MDYIRYMKASKDYNSDSRHCLYGLDADLIMLGLCSHEPNFSLLREEVKFGKQQVKLTPEE
TKFCLLHLSLLREYIEHEFSPIKDKLPFPFDIEKIIDDWVLMGFLVGNDFIPHLPNLHIA
NGALPILYRAYKEVLPTLDGYINEAGTLKLDRFEKFMEKLSRLDVEQFNEHYADIKFFES
KTGRRPNESERHVYKKLEDIENASPKKTQIKDLDYVQDTADMLLGNFDDDDDVFIEYKDM
DLMDDESDSDVYNLEFVQHKKDYYINKLEYENVDEEVLRSQAEGYVRAIQWNLHYYYHGC
CSWSWYYPHHYAPYISDIKDFKDLKLEFDLGEPFLPFQQLLAVLPALSKDLLPEAFQSLL
TEESSPIINYYPHNFKTDLNGKRQEWEAVVLIPFIDEKLLVSAMQPHLSRLSVEEQARNK
HGPMSLYSFSNEIRNVYTATAFFPEFNNQSEVKLMNRDDIFVPREKLIRGLSPGFDLNVY
YPGFPTLRHLDHTAHLEKAKVKVFQQHSLEENMILSIISKKTPNLTTLASELLGKTVYVE
WPHLKEALVIAVADCNTKLSLIDSLGNYSHDNLKKEDVKGLLAAEWSGYDRQIKEILMSR
HGINIGDTNVLLYTRLYLGHNYIFGSQGKVTVEKQWNESSTVYAYQTVVKDISVYSKTLP
VYETMHDIFIPGTFCFMLGHPYYGAMGEVMQNKDISKSRRIKIFIKAVREPIFENIKQAY
THQKTRYMHGSIAAQRLGISSHLLSRITGTIFVIQAVSKDELTKHNVGLNLKFNKRNEEV
SGYTKKENTQWLYSMKAIELIRNYMVKCPKLFERLAKNVTNDIFQEEDLFDKGSDELMDT
VKWLKAELHGLESRPCGMDVIETDLIKQLEEEVEKFLEAEQTTAKTVYLQVKPQLLYKPG
LHLRSVPPDLNSQNRLFDRIRSVRSGFSVPLGSKGTIIGIRNGSNLIDTTYDVLFDKPFM
GGLTLNGCSQFRGYRLTTVDFINISFGERTEQGNPANELVECRKQQMANTASPNKNNDQS
SKTIPQMQLAKKGLEKLNRDICLRMAQHGMLELNPKTIPCKTFQQNPQNAPPNQATEFQE
LWNELHKIQKPSGPPEKVIASNPMKIKPFSNSHVMVKQQQDPSAFLKAMLKIPDVNLQPN
KQECKQQSAVQFAGTSPKTTVLQKDQVLKPPPLVQQLFDHARRTEQTKEKANPVWYSSQL
LRHFSYNGASIPKYSYIVDEKTGLINAHVMLENSKIFKGDPCTSHEQATESAAKKAYKTL
NLNKTSMHDTKIVMAPHWFNAQQQNNWIQNIRPPMIPSPMGPPLKIPPVPQNIPMQPNLF
YPKWNPKLPPNPAFGQIASYNQGRQQQVKHLGQQKGPQNGPKMEIRNSTAFVPLQAQKKN
RNASVQQTSRETNLNVKKSSSPKAQQKQHQQKQEETLSKKQRPEIVNKTKEKTSSELQQQ
TLQQPQQNAGKFSKPRKSRVAAKFGAPPLSKGAEIQ
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtaccgaaattcttcagatacataagcgagaggtatccctgtctcagcgaaatc
gtgaaggaacatcagataccggaattcgattatttatatttggacatgaacggtatcata
catacatgttcccatccaactgatgatgtttgctttcgcatctctgaagagatgatattt
aagaatatatttcactatatagaaatattattcaacatgattcgccctcaaaagctgttt
tttatggcgattgatggagttgcacctagagctaagatcaatcaacagagaggtcgacgt
ttcagagctgccaaggatgctgaggtacaagaggctaaagctagatcaaagggtatacca
atacctactgaaaagagatttgattcgaattgcataacccctgggacactttttatgtct
aaattgagtgagcagctcaaatgtttcattgaacataaaatttccactaatgatgagtgg
aaaaaatgtaaaatactgttcagtggttctgaggtccctggagaaggcgagcataaaatt
atggattacataagatacatgaaagcaagcaaggattacaatagtgactctcgacactgt
ttatatggcttggatgccgatttaataatgttagggctttgttcacatgaaccaaatttt
tctcttttgagagaagaagtcaagtttggcaagcaacaagtgaaattgacccctgaagaa
acaaaattttgccttcttcacttgtcgcttttgcgagaatacatagaacacgagttctcg
ccgatcaaagataagttaccttttccatttgatattgaaaaaataatcgatgactgggtt
ttaatgggttttctggtaggaaatgattttattcctcacctgccaaatttacatattgcc
aacggtgcactgccaattctgtaccgtgcatacaaagaagtattaccaacgctagatggt
tacataaatgaagcaggaacattaaaactcgatcgttttgaaaaatttatggagaaactt
agtcgtttagatgtagaacaatttaacgagcattatgccgatataaaattttttgaaagt
aaaacaggtagaaggcccaatgaatctgaacgtcatgtatataaaaaattggaagatatc
gaaaatgcatctccaaagaaaacacaaattaaagatttagattatgttcaagataccgcg
gatatgcttttaggtaattttgatgatgatgatgacgtctttatagagtacaaagatatg
gatttaatggatgacgaatccgatagtgatgtgtacaatctggaatttgtacaacataaa
aaagattattacataaacaagttagaatatgagaatgttgatgaggaagttttacgttca
caagctgagggctatgtgagagcgatacagtggaacttgcattattattatcacggctgt
tgcagttggtcgtggtattatccgcatcattatgctccatatatttcggacataaaggat
tttaaagatttaaaattagaattcgatttaggagaaccgtttttaccttttcaacaattg
ctagcggtattacctgcacttagcaaagaccttttaccagaagcatttcaatcactatta
acagaggagtcttctcctattattaattattatccacataattttaaaactgatttaaat
ggaaaacgacaagaatgggaagctgtcgtccttattccatttattgacgaaaagttgtta
gtatctgctatgcagccacacttatcgagattatcagtggaagaacaagcaaggaataaa
catggaccgatgagtttatactcttttagtaatgaaattcgaaatgtttatacagcaact
gcattttttccagaatttaataatcaatcagaagtaaaattaatgaatcgcgatgatata
tttgttccaagagaaaaattaataagaggattatctccaggctttgatcttaatgtttat
tatccaggatttcctacattacggcatttagatcatacagcgcatttggaaaaagcgaaa
gtcaaagtgtttcaacaacattcacttgaagaaaatatgattctaagcataatatcgaag
aaaacaccaaatttaacaaccctagcgtcggaactattgggaaagacagtgtatgtggaa
tggccacatttaaaagaggctcttgtgattgctgtggctgactgtaatacgaaactcagt
ttaatcgattcattaggcaattacagtcacgataatctaaagaaagaagacgttaaaggt
ctattagccgcggaatggagcggatacgatagacaaatcaaagaaatattaatgtcacgt
catgggataaatattggtgatacgaatgtattactttacactcgtttatatttgggccac
aactatatttttggttctcagggaaaagtaacagttgaaaaacaatggaatgaaagctcc
acggtttacgcttaccaaactgtagtcaaagatatttctgtctacagtaagacattgcca
gtttacgaaactatgcacgatatttttataccaggaaccttttgttttatgttgggacat
ccctattacggtgcgatgggagaggtcatgcaaaataaggatatttcaaaatctcgcaga
atcaaaatttttataaaagctgtaagggaacctatatttgaaaatatcaaacaagcctac
acacatcagaaaacgcgatacatgcacggcagtattgccgcgcaacgtcttggaataagc
agtcatcttttgagcagaatcactgggacaatttttgttatacaagcagtttcgaaggac
gaacttacgaagcataacgttggattaaacttgaagtttaataaaagaaatgaagaggta
tccggttatactaaaaaggagaacactcaatggttgtatagcatgaaagcaattgaacta
attcgaaattacatggtgaaatgtcctaaattatttgaacgtttggctaaaaatgtaaca
aatgacatttttcaagaagaggacttattcgataaaggatcggatgaattaatggataca
gtaaaatggctgaaagcagaattacatggtttggaaagtcgtccttgcggaatggacgtc
attgaaaccgacttaataaaacaacttgaagaggaagtggagaaattcttggaggctgaa
caaactactgcgaaaacagtttatctgcaagtgaaaccacagttactttataaaccaggc
ttacatctgcggagtgtaccgcccgatctcaattcccaaaatcgtttattcgatagaata
cgctctgtcagaagcggttttagcgtacctcttggatctaaaggcactatcataggaata
cgaaacgggagcaatttaattgatactacgtatgatgttttgtttgataagccttttatg
ggtggtcttacattaaacggttgctctcaatttcgaggttatcgtttgacaaccgtggat
tttataaacatcagttttggtgagagaacagaacagggaaatccggcgaacgaattggtt
gaatgtcgaaagcagcaaatggcaaatactgcttctcccaataagaataacgatcaatcg
tcaaagacaattcctcaaatgcaactcgctaagaaaggactcgaaaaattaaatcgtgat
atttgtttgcgcatggcgcaacatggtatgttagaattgaatcctaaaacaataccgtgc
aaaacgtttcaacagaatcctcaaaacgcaccgcctaatcaagcaactgaattccaagaa
ctgtggaacgagttgcacaagatacaaaaaccgagcggaccaccggaaaaggtaatagca
tctaatccaatgaagatcaagccatttagcaacagtcacgttatggtaaaacaacagcaa
gatcctagtgcgtttttgaaagctatgttgaaaattcctgatgtaaatttgcaaccgaat
aagcaagaatgtaaacaacagtctgcagtacaattcgcaggaacgtctccaaaaacgacc
gttttgcaaaaagatcaagttttaaaacctccacctttggtacaacagttatttgatcat
gcccggcgaactgaacagacaaaggagaaagcaaatccggtatggtatagctcgcaatta
ctgagacatttttcatacaacggagctagcataccaaaatatagttacattgttgatgag
aaaacaggtttaattaacgcccatgttatgttggaaaattcgaaaatttttaaaggcgat
ccttgcacctctcacgagcaggccacagaaagcgctgcaaaaaaagcttacaagacatta
aatttgaataagacgtcaatgcacgatacgaaaatagtaatggcacctcactggtttaat
gctcaacaacaaaacaactggattcaaaatatccggcctcccatgataccttctcctatg
ggacctcctctgaaaataccgccagtcccgcagaatatacctatgcagcctaatttattt
tatccgaaatggaatccaaaattaccaccaaatccagcattcggacaaattgcatcgtat
aatcaaggtagacaacagcaagtgaaacatttaggacaacagaaaggaccccagaacgga
ccaaaaatggagattagaaatagcactgcatttgttccgttacaagctcaaaaaaagaat
agaaatgccagtgtacaacaaacttcgagagaaactaatctaaatgttaagaagagctcg
agtcctaaagcacaacagaagcaacatcagcagaaacaagaagaaactttgtctaaaaaa
cagagaccggaaattgtaaataagaccaaggagaaaacgtcgagcgaattacagcaacag
acattacagcagccacagcaaaatgcggggaaattctctaaacccaggaagtcgcgcgtt
gctgcaaaattcggcgcaccacccttgtcgaaaggtgcggaaattcaataa
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integrated database retrieval system
