Cardiocondyla obscurior: 139101658
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Entry
139101658 CDS
T10704
Symbol
Rrp6
Name
(RefSeq) exosome complex component 10 homolog
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139101658 (Rrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139101658 (Rrp6)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
139101658 (Rrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
139101658
NCBI-ProteinID:
XP_070511086
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All DBs
Position
LG04:complement(7437508..7441144)
Genome browser
AA seq
868 aa
AA seq
DB search
MELAENQNDDASVSQNDDVVIEGDEQPNRLVPGYATFDDFVQDAFDVMRAGIKAANNLPI
GDNFNYYACFPSFNDARQKDTERILDTMQSIMKLAKIPSNIKIRNLEEKFDLLIETNDQL
LDQANILMDEESGIIRNPQVELVMSQMPKPFVNGSWNVKANVNQNSDGSDKVRLLGAKNI
QRPQLMFKDKIDNSMKPWVPRIKDKPNSLTPLALYVDECEQNEVFNHPYEFELDKFEIPK
NQLKKRTPTKYKPLEDTKLVFIDKPAHLKALLDDLRRRKEIAIDLEHHSYRTFQGITCLM
QISTTEIDYLIDTLALRSELHQLNEIFTKPSILKVFHGADSDILWLQRDLSLYIVNMFDT
HQAAKQLNLPYLRLAYLLSKYCGVVANKLFQWADWRIRPLTTEMMKYAREDTHYLLYIKD
MLTNELIDIANGKSNILKSVYDESTEICKRIYMKPIWTEESCMHMYRKSHMLFNNKQMYA
LVELHRWRDLTAREEDDSTDYVLPNQMLLNIAKTLPREMQGILACWHRIPPLVRQNLLKI
HKIVLKARDQPLVKSIPEQNIRQRPMHQNHETDIGISLYIPHDIPSGTEARADLPCLLDK
INMSKSLPKENTCQVKHSITIFDTPVTSEDELESENSNRKKKKTIFISPYMRYKCVIPMV
INEEAKEREKQKKEEEKEENLTVRTEVDRINDDEINESINRVHEHFKKVTQINTQVEVPS
KKKKKKNKQFKTINQIKGAKRKKNFDIANEKWNTNNDSNAEHLSKRLKPETSGEQKMQNS
FAQASNSNTEAPCTIRPRKKGEKKANAKMLKKQGMLPSEKFDYKSVDFNSFQGGSTQSSA
NSTKFQHQQKKKQKQRPNQRWKMQKFNI
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgccgaaaaccagaacgacgacgcaagcgtctcgcaaaatgatgacgtcgtc
atcgaaggagacgaacaacctaaccgtctcgtacctggttacgcgaccttcgatgatttc
gttcaggatgcatttgacgtgatgagagctggaatcaaagcagctaataatctgcctatt
ggagataacttcaattattatgcttgctttcctagctttaatgatgctagacagaaagat
acagagagaatactggatacaatgcagagtataatgaaactagccaaaattcctagcaac
attaaaattcgaaatcttgaagaaaaatttgatcttttaattgaaacaaatgaccagcta
ttggaccaagctaatatattgatggatgaggaaagtggtattatacgaaatcctcaagtg
gaattagttatgtcacaaatgccaaaaccatttgtgaatggttcttggaatgtaaaagct
aatgttaaccaaaattctgatggttcagataaagtaagattgctgggtgctaaaaatata
caaagaccacagttaatgtttaaagataaaattgacaatagcatgaagccatgggtacct
agaattaaggataaaccaaactccctgacgccattggctctttatgtagatgaatgtgag
caaaatgaggtttttaatcacccttatgaatttgagctagataaatttgaaataccaaaa
aatcaattgaaaaaaagaacaccaacgaaatacaaaccattggaagacaccaaactcgta
tttatcgataaaccagctcatttaaaagcacttctagatgacctgagaagacgtaaagaa
atcgctatagatttagaacatcattcttatagaacgtttcaaggcattacatgtttaatg
caaatatcaacgacagaaatcgattatttaattgatactttggctttacgatcagagtta
catcaacttaatgaaatttttacaaagccttcaatcctcaaggtttttcatggtgccgac
agcgatattttatggcttcagagggacttgtcgctgtatatagttaatatgtttgacacc
catcaagctgcaaagcagttaaatctaccctatctcagactagcttatctgttaagcaaa
tattgcggtgtagttgccaataaactttttcaatgggccgactggcgtataaggccttta
acgacagaaatgatgaaatatgcgagagaagatacgcactatctactttacataaaggac
atgctaactaacgagttaatcgacattgctaatggcaaaagtaatattttgaagtctgtg
tatgatgaaagcactgaaatttgtaaacgcatatatatgaaaccaatttggacagaagaa
agttgtatgcacatgtacaggaagagtcatatgttgtttaacaataaacagatgtatgca
ctcgtcgagttgcacagatggcgagatctcaccgcgagagaggaagatgacagtaccgac
tatgtcttgccgaatcaaatgttactcaacatagcaaagactctaccacgtgagatgcaa
ggcattctggcatgttggcatagaattccaccgttagtgcgacaaaatttgttgaaaata
cataagatagtactgaaggctagggaccaaccgcttgtaaaatctattcccgaacagaat
attcgacagagaccaatgcatcagaatcatgagacggatatcgggatttctttgtacata
ccgcacgatataccgagcggcacagaagcaagggcggacttgccatgtcttttggataaa
ataaatatgtcaaagtcattgccaaaagaaaatacgtgtcaggtgaaacattctataacg
atatttgacacaccggttacatccgaggacgaactcgagagtgaaaacagtaacaggaaa
aagaaaaagactatatttataagtccatatatgagatataagtgtgttatacctatggta
ataaatgaagaagcaaaagaacgtgaaaaacaaaaaaaagaagaagaaaaagaagagaat
ttaactgtaagaactgaggttgatcgcataaatgacgatgagattaatgagagtattaat
agagttcacgaacatttcaaaaaagttactcaaataaatacacaagtggaagttccatcc
aaaaaaaagaaaaagaaaaataagcaattcaaaactataaatcaaataaaaggcgctaaa
cgaaagaaaaattttgacattgcaaacgaaaaatggaacacgaacaatgattcgaacgct
gaacatctgtccaagagattaaaaccagaaacgagcggggaacagaaaatgcaaaacagt
tttgctcaagcctcgaatagtaatactgaagcaccttgtacaataagacctagaaaaaaa
ggcgagaaaaaagcaaatgcaaaaatgcttaaaaaacagggtatgttaccatctgaaaaa
ttcgattacaaatcagtagacttcaacagcttccaaggcggtagtacgcaaagtagcgca
aattcgaccaaatttcaacatcaacaaaaaaagaaacagaagcaacgcccaaaccaaagg
tggaagatgcagaaatttaatatttaa
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