Cardiocondyla obscurior: 139101713
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Entry
139101713 CDS
T10704
Symbol
Pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03430
Mismatch repair
cobs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139101713 (Pms2)
03460 Fanconi anemia pathway
139101713 (Pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139101713 (Pms2)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
139101713 (Pms2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
DUF7447
SecD-TM1
Motif
Other DBs
NCBI-GeneID:
139101713
NCBI-ProteinID:
XP_070511180
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Position
LG04:complement(10265417..10268275)
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AA seq
672 aa
AA seq
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MDEPVATTEKSKKITAINKETVHRICSGQVVLDLAIAIKELVENSLDSCATVIDVKLIDY
GKTCISVSDNGSGVLERDFEGLGLKHHTSKLREFTDLTEVNTFGFRGEALSSLCALSELN
IVTRHTSSEHGFKLEFDRNGVLIKKEPCAREKGTTVHVRNIFKNLPVRAKEFQKNLKKEY
ARAIQVLYSYCLVSTGIKITCSNSTLGKSPNLVVATRNTHNVLDNINLVFGKKSLDGIVK
LELQSPDETTLQEYNLPNDIAIDFDWECYVSDCSHTVGRSSPDRQFFYVNGRPCDLTKIS
KLINTVYHKYNNKQYPFVFFNINLDRQCADVNVTPDKRTIFVTQERLILATVKFSLITKW
NKMQGNFTVKTLTELNSGLKRTISSQHNDPPAKRLQISTPTSHDVEESDIQTNIKSMKKP
ADVEMMISIATIKEKLNEKKNIISAPTSTAKKIKYRVQMEDKQSDAEKELQRELTKDSFD
QMEIIGQFNLGFIIARLEDDLFIIDQHATDEKFRFEKLSNETKLKTQKLIVPKSLNFSAV
NETILIEHQRIFEDNGFTFNINEEAESGKKIELVGIPVSGYWQFDQKDIEELIFLIREAG
NENKTKDIYRPSRVREMLASRACRSAVMIGTALNLSDMHKLITQMAQMHNPWNCPHGRPT
IRHLLSLLLIKK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcctgttgcaacaactgaaaaatcgaaaaagataacagctataaacaaggaa
acggttcatcgaatctgttccggccaggtagtgctcgatcttgcgatcgcgatcaaagag
ttggtagagaacagtttggacagctgtgctacggtgatcgatgtcaagctcattgattac
ggtaaaacgtgcattagcgtcagtgataatggtagcggcgttttggaacgagactttgaa
ggcctaggtttgaaacaccacacttcaaaactaagagaattcacagacttgaccgaagta
aatacattcggcttccgtggcgaagcgttgagttcactgtgtgccctgtccgagttaaat
atcgtcacgaggcatacatcaagcgagcatggctttaaattggaatttgaccgaaacggc
gtgttaataaaaaaagaaccatgcgccagagaaaaaggtaccacggtacacgtgagaaat
atattcaaaaatcttccggtaagagcaaaggagtttcagaaaaatctgaagaaggagtat
gctcgcgctatccaagttttgtacagttactgcttggtttccaccggcatcaagatcact
tgttcgaattcgacgttgggtaaatcgcctaatcttgtcgtcgccacaaggaacactcat
aatgtactggataatattaacttagtgtttggcaagaagtctttggacgggattgttaaa
ctcgaattacaatccccggacgaaacgacgttacaagaatataatttgcctaatgacata
gcgatagatttcgactgggaatgttacgtgagtgattgcagtcacacagtcggacgttct
tcgccagatcggcaatttttttatgtgaatggaaggccgtgcgatctcacaaaaatcagc
aaactgatcaataccgtgtatcataaatacaacaacaagcagtatccgtttgtcttcttc
aacattaatttagatcggcaatgcgccgacgttaacgttactcccgacaagaggacaata
tttgtgacgcaagagcgccttatattagcgacagtaaaattcagcttaattacgaaatgg
aacaagatgcaaggaaatttcacagtcaagactttaacggaattaaattctggtttgaaa
agaacaatctcatcgcagcacaatgatccgccagcgaaaagattacaaatatcgacgccg
acatcgcatgacgtggaagaaagtgatattcaaactaacattaaatcaatgaaaaagcct
gcagatgtggaaatgatgataagtatagcaacgataaaagaaaaattaaacgaaaaaaag
aatattattagcgcacctacgagcacagctaaaaaaataaaatatagagtacaaatggaa
gataaacaaagcgacgctgaaaaagaattgcaaagagaattgacaaaagattcattcgat
cagatggagataataggtcaatttaatcttggtttcataattgctcgtttggaggatgat
ttatttatcatcgatcaacacgccaccgatgaaaagtttcgctttgagaagcttagtaac
gaaacgaagctgaaaactcaaaaacttattgtaccgaagtcgctgaatttttctgcggtg
aacgaaaccatacttatagaacaccaacgaatattcgaagataatgggtttacttttaat
atcaacgaagaagctgagtctggtaaaaaaatcgaactagtaggaatacctgttagtggt
tattggcaattcgatcaaaaagatatcgaggaattgatatttcttattagagaagcaggc
aatgaaaataaaacgaaggatatatatcgtccaagtcgtgttagggaaatgttagcgtcc
agagcatgtcgtagcgccgttatgatcggcacagcgttaaatctgagcgatatgcacaag
ttgataacacaaatggcgcaaatgcataatccatggaattgtccacacggtagacccact
ataaggcacctattatctttgttattaataaaaaaataa
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