Cardiocondyla obscurior: 139101762
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Entry
139101762 CDS
T10704
Symbol
L(1)g0007
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139101762 (L(1)g0007)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139101762 (L(1)g0007)
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139101762 (L(1)g0007)
Spliceosome [BR:
cobs03041
]
Complex C
Other components
Step II factors
139101762 (L(1)g0007)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
nSTAND_NTPase5
AAA_30
SLFN-g3_helicase
AAA_16
Sigma54_activ_2
ResIII
ABC_tran
T2SSE
ATPase
Sigma54_activat
PhoH
NB-ARC
cobW
ATPase_2
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
139101762
NCBI-ProteinID:
XP_070511265
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All DBs
Position
LG04:2541434..2546640
Genome browser
AA seq
1131 aa
AA seq
DB search
MSDDPSFYRLEGTGNETGGLVIRKKPSDHTFKKPSVLGLDKLAERKRREQSQEPTSSKSN
KSDGRDRRYRSYEEETPTHTGGVNSEAQQRLESRLKRQRLNANDRNSRNSYRGHDRDRDR
RRDRDRESRGRDSSVRHTPLRFKDEPQTPKFRMKDPTSKSNWDDDEDEEPRRSSWDHPTP
NLYNNRDGRDSIRSEFTPSYKYNSWNKEFKRSGATPLVEGEEKELWEEEQQRLDREWYAL
DDGENNAFANVSEEYTRKKEMELEARRQKRLSAQQRQINKDNELWERNRMLTSGVVSSLD
HDDDPDDEGEARVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSDMALVARKGSALVK
AYREQKERRRAQKKHWELAGTHIGNIMGVHDRRKDDKEQAGQETDFKAGQKYARHIGSGE
ITGEAKHRNIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTTQLTQYLHEDGYS
RNGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTSKDTVIKYMTDGILLR
ESLREGDLERYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDCSKFSAF
FGNAATFQIPGRTFPVEVLHAKNPVEDYVDAAVKQVLQIHLQPKSGDVLVFMPGQEDIEV
TCEVLKERLAEIDSAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETSLTVD
GIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRQGRAGRTGPGQCYRLYTRRQYL
DELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILGALDH
TGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGREEDSD
SAREKFQVPESDHLTYLNVYNQWKSNGYSSSWCNDHFIHAKAMRKVREVRSQLEEILKQQ
KMDVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTPD
YVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQAMQHLHEMEHQ
MKEAEEEMKARAQEQLEREQASVRKKEILTPGIREPGTPAPYRNTPGRLGL
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgatccgagcttctacagattagaagggactggaaatgaaacaggtggtttg
gtcatacgtaaaaaaccttctgaccacacttttaagaagccttctgtattagggcttgac
aaacttgctgagaggaaaagaagagagcaatcacaggaacctaccagctcaaaatcaaat
aaatctgatggaagagataggagatatcgatcttatgaagaagaaactcctactcatact
ggaggtgttaattctgaagcacaacaaagattggagtccagacttaagcgccaacgatta
aatgccaatgacaggaattctagaaattcatatagaggacacgatagggatagagaccgt
cgaagggatcgagacagagaaagtcgcgggagagatagtagcgtaaggcatacgcctctt
agattcaaggatgagcctcagacaccgaaatttcgaatgaaagatccaacttctaaaagc
aattgggacgacgatgaggatgaagagccaagacgatcaagttgggatcacccgacacca
aatttgtataacaatagagatggtcgtgatagtattcgaagcgaatttactccttcttat
aaatataattcgtggaataaagagtttaagcgttccggcgctactccactggtagaagga
gaggaaaaagaactatgggaagaggaacaacaaaggctagatagagaatggtatgcgtta
gacgatggagaaaataatgctttcgcgaatgtctctgaagagtatacacgaaaaaaagaa
atggaattggaggccagaaggcagaagcgtctgtctgcacagcaacggcagataaataaa
gataatgaactatgggaacgcaatcgtatgttaacatccggagtagtgagctcattggac
cacgacgacgatcctgatgacgaaggagaggcaagagttcatttgttagttcataatgtt
gttccgccgttcttagatggacgtattgtattcacaaaacaaccggaacccgttgtacct
gtacgtgatcctacttccgacatggctttagtagccaggaaaggttcggcgttagttaag
gcataccgcgagcaaaaggaaagacgtagggcacaaaaaaagcattgggaactagccgga
acacatatcggcaatatcatgggtgtacacgatcgacgtaaagacgataaagaacaggca
ggccaagaaactgactttaaggccgggcaaaaatatgctcggcacataggatcgggagaa
ataacgggagaagctaagcacagaaatatacagcatcaaaggagaagtcttcctgtattc
gcggtacgtcaagaactgctgaatgttatcagagagaatagtgtcgttgtaatagtagga
gaaactggtagcggcaaaactacacagttaacacagtatctccacgaggatggctatagt
cgcaacggtattattggttgtactcagcccagacgagttgctgcaatgtccgtcgcgaaa
agagtatctgatgaaatggccactgctctaggcgataaagtcggatatgcgatacgtttc
gaagattgtacttcgaaagatactgttattaaatatatgaccgatggtattttgctaaga
gaaagtttgagggaaggagatttggaacgatatagtgtgattataatggacgaagctcat
gaacgatcactttctactgacgtattatttggtcttcttagagaggttgttgctagacga
cacgatttaaagttaattgttacttccgcaacaatggattgcagtaagttttctgccttt
ttcggtaatgcagcaacattccaaatacctggacgcacgtttcctgtcgaagtattgcac
gcgaaaaatccagttgaagattatgtggatgcagccgtaaagcaagttttacaaattcac
ttgcagcctaaaagcggcgatgtattagtttttatgcctggtcaagaagatattgaagtc
acttgcgaagtcttgaaggaacgtttagctgaaattgattcggctccgcctctttctata
ttacctatttattctcagctgccatcggacttgcaagcaaaaattttccaacgatctgaa
ggtggtcttcgcaaatgtgtcgtggcaactaatatagcagaaacatcgctgacagtcgac
ggaatcgtcttcgtcgttgactctggatactgtaaattgaaagtatacaatcctcgaata
ggtatggatgctctgcaagtatatcccgtgtcgagagctaatgctgatcaaagacaaggc
cgagccggtcgtactggacctggtcaatgttatagattatacacgcgaagacaatactta
gacgaattattattaacgggagttcctgagatacaacgtacaaatctagctaacacagta
ctattgctaaaatcgctgggagttcaagatttattagcgtttcattttatggatccacca
ccgcaagataatatattgaactcgttgtatcagttatggatcttgggagcgcttgaccat
actggacgcttgactccacttggtcgacaaatggcagagtttccgttggatccgccacaa
tgtcaaatgcttatagtcgcttctcaacttggttgtactgcggatattctcattatcgtc
tctatgttgtcagtaccatcgattttctatcgaccaaaaggacgcgaagaagattcagat
tcggcacgcgaaaaattccaagttcctgaatcggatcatttaacatatttaaatgtatat
aatcaatggaaatcgaatggttattcgagttcttggtgtaatgaccactttatacatgca
aaagcgatgcgcaaagtgcgagaagtacgatcgcaactcgaggaaattctgaaacaacaa
aaaatggacgttgttagttgcggtaccgactgggatattgtacgaaaatgcatctgctct
gcttacttccaccaagcagcgcgcctgaaaggcattggcgagtacgttaattgtcgtact
ggaatgccttgccatcttcacccgacttctgcgttatttggtatgggattcacacctgat
tacgtcgtgtatcacgaactcgtgatgaccgccaaagaatacatgcagtgtgtcaccgca
gtagacggtcactggctggctgaactgggcccaatgtttttcagtgtaaaagagactggt
cgaagcggtcgtgcaaaacgacgtcaagcgatgcaacatctccacgaaatggaacatcaa
atgaaagaggctgaagaggaaatgaaagcacgcgctcaagaacaactcgagcgagaacag
gcatcagttcgaaagaaagaaattttaacgcctggtattcgagaaccgggcactcccgct
ccgtatcgtaacacacctggaagattaggattgtaa
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integrated database retrieval system
