Cardiocondyla obscurior: 139101763
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Entry
139101763 CDS
T10704
Symbol
Gnf1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03030
DNA replication
cobs03410
Base excision repair
cobs03420
Nucleotide excision repair
cobs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139101763 (Gnf1)
03410 Base excision repair
139101763 (Gnf1)
03420 Nucleotide excision repair
139101763 (Gnf1)
03430 Mismatch repair
139101763 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobs03032
]
139101763 (Gnf1)
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139101763 (Gnf1)
DNA replication proteins [BR:
cobs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139101763 (Gnf1)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139101763 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_30
Rad17
AAA_22
BRCT_2
RuvB_N
AAA_5
AAA_14
PTCB-BRCT
AAA_16
AAA_6
NTPase_1
AAA_17
RNA_helicase
AAA_33
nSTAND3
AAA_18
AAA_7
AAA_19
Viral_helicase1
TsaE
Motif
Other DBs
NCBI-GeneID:
139101763
NCBI-ProteinID:
XP_070511266
LinkDB
All DBs
Position
LG04:2612360..2617887
Genome browser
AA seq
1014 aa
AA seq
DB search
MPKDIRSYFAPAATSKKKNGQPVVSKPQKRHIISSDEDEEEQKSSKKRSKVVQKKKKVSV
LSDSEDEVIFVENNKPDSKQCETNKKSVIEKPRIEIPSSELFSKKPIARVEETKVNQKLQ
KVESEFHYDEDFDAVLKQLDTIQDPVVQDKKKPKNKDISKTRVAKTDVDFNESKKNDMRL
KKSNNETVKIKFEEVNIPCNKNNVLSKVANSPSKQKLHKNKKDNSNEDLYIIDKHNESGN
LNNLTSTSASEEDKDIRRSPRKKPKLDLFDERNEKKKQRAIMYEKYLQRGGARNPGSKKI
PTGAENCLVGVNFLITGVLDSLERNEAEDLIHKYGGRTVNTVSNKVNYVIVGDEAGPVKL
TKAKTLGIKQISEDDLLEMIRIRPEGKAIAIKPAKTKLNTKKISNKSESDELSSPSKIKA
SLNSSEKIKMSPSSPAKIKKLSPVKPDLKTSSVEKISTSIGSEPLVEKYRPKTMKQIIGQ
QGDKSCAHNLYVWLRDWHKNRQDPKVQSGTSKQTHGQSFKAALLSGPPGVGKTTTVQVVC
KELGYDLVEFNASDTRNKSLLKDAVSGLLSNTTMKDYVTGTKQKITNKHVLLMDEVDGMA
GNEDRGGLQELVSLIKNTEVPIICICNDRFNTKVKTISTHSYDLKYPKLRVEQIRSSMKS
LCFKENINLSTEDLDRLIESTNYDIRQVINHLEFLGNQISHVQATDKKHSNKNFKIGPFD
VTKVAFNAKEQKNMSLNDKINLYFNDYNITPLFIQENYLDIRLSQVSPLERLERIANAAD
SISTGDLIEKMIRTNMMWSLLSMHACFSFVIPANEMPGWSDGLIRFPSWFGRNSKAMRFN
RLMQELTTHTRLATGASKEALNMDYLVHIRNSIVNPLINNGVDGIDAAISIMGQYYLTRE
DLDSAIEISLWPGMYDPTTKLDSKVKAAFTRAYQKKSPMLPYAINSTATAKKKSVQDNDI
IEEADDEGETDDIEFDKMIKAKKPVTAGTSKAASSTKKNGEPAKKRGRGRGKAK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggatattagatcttactttgctccagctgcaacatctaaaaagaagaatggt
caacctgttgtctcaaagcctcaaaaacggcatattatttcatcagatgaggatgaagaa
gaacagaagtcatctaaaaagcgctccaaagttgtacaaaagaaaaaaaaagtgtcagtt
ttgtctgattctgaggatgaagtaatatttgtggaaaataataaaccagattctaaacaa
tgtgagacaaataagaaaagtgtgattgagaagccacgcatagagataccatccagtgaa
ctttttagcaagaagccaatagcaagagtagaagagacaaaagtcaatcaaaagttgcag
aaagtggaatctgagtttcattatgatgaagattttgatgctgttcttaaacaattggac
acaattcaagatcctgtagtgcaagataaaaagaaacctaaaaataaagatatttctaaa
acacgtgtagctaagacagatgtagactttaatgaaagcaagaaaaatgacatgcgtttg
aaaaagtccaataatgaaaccgttaaaataaaatttgaagaggtaaatataccttgtaat
aaaaataatgtactttcaaaagttgcaaattctccttcgaaacaaaaattacataaaaac
aagaaagataactctaacgaagatttatatataatcgataagcataatgaatctggcaac
ttgaataatttaacatctacctctgcatcggaagaagacaaagatataaggagatcacca
agaaagaaacccaaattagatttatttgatgaaagaaacgaaaagaaaaaacaacgtgct
ataatgtacgaaaaatatcttcaaagaggcggcgccagaaatcctggttcaaaaaaaatt
cctacaggcgcggaaaattgtttagttggagtaaatttcttgattaccggtgttttagat
tctttagagaggaatgaagctgaagatttaatacataaatatggcggacgaactgtaaat
acagtatcaaacaaagtaaattatgttatagtgggagatgaggctggcccagttaagttg
acaaaagcaaaaacattaggcattaaacaaatatctgaggatgatcttctcgaaatgatt
cgtataagaccagaaggcaaagctatagctattaaacctgcaaaaacaaagttaaatacg
aaaaaaatatcaaacaaatctgagagcgatgaattgtcatcaccaagtaaaattaaagca
tcattaaattcatctgaaaagataaaaatgtcaccatcttcaccagcaaaaattaaaaaa
ttatcgccagtaaaaccagatttaaaaacgagcagtgtagagaagataagtacaagcatt
ggatctgaaccgttagtagagaagtatagacctaagactatgaaacagattataggtcaa
caaggagataaaagttgtgcacacaacttgtacgtatggttacgtgattggcataaaaat
cgtcaggatcctaaagttcaaagtggcactagcaagcaaacgcatggacaaagttttaaa
gctgctttgttgtctggtccaccgggtgttggtaaaactacaacagtgcaagttgtttgc
aaagaattaggatatgatcttgtggaatttaacgcttctgacacacgaaataaatcactt
ttaaaagatgcagtctcaggattattgtctaatactacaatgaaagattatgtcacaggt
accaaacaaaaaattacgaacaaacatgtgctgttaatggatgaagtcgatggtatggct
ggtaatgaagatcgcggtggtttacaggaattagttagtttaataaaaaacacggaagta
ccaattatatgtatatgtaatgatcgatttaacacgaaagttaaaaccatttctacacac
agctacgatctaaaatatccaaaactcagagtggaacaaattaggagttctatgaagtct
ttgtgctttaaagagaacatcaatctttcgacggaggatcttgatcgtttaatcgagtca
acaaattacgatattcgacaagtaataaatcatttggagtttcttggcaatcaaatatct
cacgtgcaggcgactgacaaaaagcattcaaataaaaatttcaagattggcccatttgat
gtcacaaaagtagcattcaatgcgaaagaacaaaaaaatatgagtttgaacgataaaatt
aatttatatttcaacgattacaatataacacctctttttatacaagaaaattatctagat
atcagattatcacaagtgtcacctcttgaaagactagaaagaatcgccaatgcggctgat
agtatatctacaggagacctcatcgagaaaatgataagaactaatatgatgtggagtcta
ctttcaatgcatgcatgtttctcgtttgttataccagctaatgaaatgccgggatggtct
gatggattgatacgattcccaagctggtttggacgaaattcaaaagcaatgagatttaat
cgattaatgcaagagttaaccacgcacacacgattagccacgggtgcgagtaaagaagct
ctaaatatggattatctagttcatattcgaaactctattgtgaaccctttgataaataat
ggtgtggatggtatagatgcagcgataagtatcatgggacaatattatttaaccagggaa
gacttggattcagcaatagaaatttctctttggccaggaatgtatgaccctacaactaaa
cttgatagtaaagtaaaagcagcatttacgcgagcataccaaaaaaaatctcctatgctg
ccatacgcaattaacagcactgctacagcgaagaaaaaatctgtacaagataacgatatt
atagaagaagcagatgatgaaggagaaacagatgatatcgagtttgataagatgatcaag
gcaaagaaacctgttactgctggtacaagtaaagctgcttcgtcgacgaaaaaaaatggt
gaacctgctaagaaacgcggaagaggacgtggcaaagcaaaatag
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