Cardiocondyla obscurior: 139101821
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Entry
139101821 CDS
T10704
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03008
Ribosome biogenesis in eukaryotes
cobs03013
Nucleocytoplasmic transport
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139101821
03015 mRNA surveillance pathway
139101821
03008 Ribosome biogenesis in eukaryotes
139101821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139101821
03009 Ribosome biogenesis [BR:
cobs03009
]
139101821
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139101821
mRNA cycle factors
Stress granule specific factors
139101821
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
139101821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
139101821
NCBI-ProteinID:
XP_070511360
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Position
LG04:complement(7706082..7712975)
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AA seq
643 aa
AA seq
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MPKKPNKRGGRNGGRGMEDKVYFGHDDRVGRDNTGPHIGPTKHRVSFKALNRPNHRDMSY
IRQFALASMDEDIPMAGSSNNNSRQVIINQRDRGGDDRNWRTVSRGRNSPMPNRHFKGGQ
FGSRMRSLPVAEASWYRIVIPYGQKYNKDYVINTLLNYMAPEEFTPIMYKVIGNEAIFYV
DEFKTVEALLNCDRKITMCDGWKLQVKAKPGYPVCEIDNKLKERLKQAMVKRYLQEKNAL
DLSKFHLDPDLCSDYFCALFLPNTLLTVLNIVAEHIPNLEALNLEGNKLQNIEKLHVLST
KFSKLNILYIGNNKIRDMYHLDAIKDLKLIELKLAGNPVCNRYKSRQNDYISDVRKRFPK
LLKLDGIELPRPIVFDVIDDTAKILPSQRMFVADAKAQEIASQFLQQYFMIYDSENRQPL
LDAYDKHACFSMTITSFQNHKLNGYLMESRDLTKIKDTHKRQKLLKHGRLPVVSFITEMP
RTRHLLNTFTMDISLVTQAMMFITITGFFQEFVGKDEPIRYFNRTFIIVPEGEGYCIRNE
QLHISQPPESTLKQLQQYVNQLNNQPTQPQTSSLAATPAVPKPTEPTNDIKQQMTMTLSQ
QTNMNLEWSLKCLQETQWNYDNALSAFQEFFKRGQVPSEAFTK
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaaaaccgaataaacggggcggccgtaacggcggcagaggaatggaggacaag
gtgtacttcggtcatgatgatcgtgtaggaagagataacaccggacctcatatcggtccc
accaaacatcgcgtatcctttaaggctcttaatcgacctaatcatagagatatgtcctac
atacgtcaatttgcattggcgagtatggacgaagacataccgatggctggcagctcaaat
aataactctagacaagttattatcaatcagagggatagaggtggagacgatagaaactgg
cgaacagtctctcgtgggaggaatagtcccatgccaaacaggcatttcaagggaggtcag
tttggctctagaatgagatctcttccagttgcagaagccagttggtatagaattgttata
ccatatggacaaaaatataacaaggattatgttataaatacacttttgaattatatggca
cctgaagaatttactcctataatgtacaaagtaataggaaatgaggccattttctatgta
gatgagtttaaaacagtcgaggcattgttaaattgtgatcggaagattacaatgtgtgat
ggatggaaactgcaagtgaaagctaaaccagggtatcctgtttgtgaaatagataacaag
ttaaaagaacgattaaagcaagcgatggttaaaagatatttacaagaaaaaaatgccttg
gatttatccaaatttcatcttgatccagatctttgctctgattacttttgtgcgttattc
ttacctaataccttgttgactgtgttgaatattgtggcggaacatataccaaatttagaa
gcattaaacttagaaggcaataagctgcagaatattgagaaacttcatgtgctaagtaca
aagttctcgaaattaaatattctgtacattggcaataataagatcagagacatgtatcat
ttagatgccattaaggatctaaagctgatcgaattaaagttggctggaaatcccgtttgt
aataggtataaatctcggcaaaatgattatatcagcgatgttcgaaaacgattcccaaag
ttgctgaaattagatggtatagaattaccacgtccaattgtcttcgatgtaatcgatgat
actgctaaaatacttccatcgcaaagaatgttcgtcgctgatgcaaaggcacaagaaatt
gcgagtcaatttttgcagcaatattttatgatatacgatagcgaaaatcgtcaaccgcta
cttgatgcatatgataaacatgcatgctttagcatgacgataacttctttccaaaaccat
aagctaaatgggtatcttatggagagccgggatttaaccaaaataaaagacacgcacaaa
agacagaaattactgaaacatggcagattaccagtagtttcttttataacagaaatgccg
cgaacaagacatttgttgaatacctttaccatggacatctctcttgttacacaagcgatg
atgtttattacgataacgggcttctttcaagagtttgttgggaaggacgagcctatccgt
tatttcaatcgaacatttataattgtcccagaaggcgagggatattgtattcgaaatgaa
caattgcatatcagtcagccacctgagtcgactctaaaacagcttcagcaatatgtaaat
caactgaataatcaaccaactcaaccacagacatcgtcactggcggccactccagcagta
ccgaagccaacggaacctaccaatgacatcaaacaacaaatgacaatgacattaagccag
caaacaaatatgaatttggaatggagcttaaagtgtttgcaagaaacacagtggaattat
gacaatgcgctttctgcctttcaagagttcttcaaacgtggacaggtaccgtcagaagcg
tttaccaagtaa
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