Cardiocondyla obscurior: 139101854
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Entry
139101854 CDS
T10704
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34 isoform X1
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139101854
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139101854
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139101854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
zf-C2H2_DHX34
DEAD
OB_NTP_bind
HA2_C
ResIII
AAA_22
nSTAND3
AAA_19
HA2_N
AAA_7
Motif
Other DBs
NCBI-GeneID:
139101854
NCBI-ProteinID:
XP_070511418
LinkDB
All DBs
Position
LG04:complement(2202329..2207550)
Genome browser
AA seq
1171 aa
AA seq
DB search
MSRYEKKQRSRSPGHDSKRREDDRYYGRKYRDTRESHKGSSSRSVQGNRETHELSAENRP
GGSNEDSCFSKYKHELNRVFTANPNLVHDVADFWKFVEKFESVKKRLGDNVDESATDSAL
NSIGVPERYHKSHCLNLKLDLSYGELFARVPDTKSLTKSQLLKFRDVILLYLDFKQKEKF
AKLKRLRDTQTNLPVARYREEIIEMIKMEKVVIIAGDTGCGKSTQIPRYLYEAGFQKIAC
TQPRRIACISLAKRVTFETLSENVSRVGYQIRFEKQKNQETNITFITEGLLLRQLSGEST
ISTYDVIVLDEVHERHLHGDFLLGIMKCIINQKPDLKLVLMSATINIELFSNYFAKENVK
VIEVPGRLYPIQLLYRPITVQDLAYKNDRFNPSPYVQIMQIIDQKYPINEKGDLLIFLSG
ISEITAVVDAAKEYSMKKNNWIVLPLHSTLSIVEQDKVFDYAPEGVRKCIVATNIAETSI
TIDGIRFVADSGKVKEMSYDPLCKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRIYSEE
EYKILEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIESPPASSIENAISSLKDHGAL
TDNEKITCIGKTLARLPVDIVIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDTE
CETSRKKLESDHGDPITLLNAFKEWLEVKQENSQEYRSSSNSSRKWCRRRGLEEQRFYEM
TKLRSQFKDLLQDCNLLKSLPEPNSSMTSAERAIRHGELKLLKSLKRTYKQSEPRKRKQL
KVETFDIQFENNDEDNEELDIKDIEFRMRNDSSQVQNLLTASTACSYKDLTMLKLILCSG
LYPQFACADEFNYCKSPSEQLFHTKAKPYVALHPMSFFGNHPQVLQIEEEDVMAIAGFKS
KTPVSSKNQILAYLSLLETTKPYLVNTLRMPAAQTLLLFAHEIDTNSTISIIACDSWLML
EFPVPDTGQVLLMKAVKLRNKWDFLLNQQLQGSDNTNDERKDFSKIEQSLMQELIEYMHT
TVPYTIKRLLPADLKMIYVGNGNNNANIEPNPFQSDFKSIPNVIKGGTYLTDNITYNCIK
ETNWSEQLIIEMQETEWHCKNCDLRGILSSIEKLQHQNSCTIADTTSDDKESGSITRKAN
SQAYECPNCLLTLYLTPIEILKHKKSHIKAS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggtacgaaaaaaagcaacgttcgcgttctcccggtcacgacagtaaacgcagg
gaggatgacaggtattacggaaggaagtatcgcgatactcgcgaaagtcataaaggcagc
tcttcgagatccgtacaaggtaaccgagaaacgcacgagttgtccgcggaaaatcgtccc
ggaggcagcaacgaagattcgtgtttcagtaaatataagcacgaattgaatagagttttc
acagcgaatccaaatcttgtccacgacgtcgcggacttctggaaatttgtcgaaaaattc
gagtccgttaagaaacgattaggcgacaacgtagacgagtctgcgacagattccgctctg
aattctatcggagttccggaaagatatcacaagtcgcattgtttaaacttgaaactcgac
ttgtcctacggagaattgtttgctagagtcccggatacgaaatcgttgaccaaatcacaa
ttgctaaagtttagagatgtaatactcttgtacttggacttcaagcaaaaggagaagttt
gctaaattaaaaagactacgagacacacagactaacttgccggttgcgcgatacagagaa
gaaattattgagatgataaaaatggagaaagtagtcattatcgcaggagatactggttgt
ggaaaatctacacaaatcccgagatacttgtacgaagctggctttcagaaaattgcgtgt
acacaaccccgaagaatagcgtgcatttcgttagcgaaacgagtaacttttgaaacgttg
agtgagaatgttagtagagttggataccaaatacgttttgaaaaacaaaaaaatcaagaa
acaaacattacatttataacagagggtttactgttacgtcagttatcaggtgaatcaact
atatctacatatgacgtaatagtcttagacgaagtacatgaacgtcatctgcatggagat
tttttattaggcattatgaagtgtattattaatcagaaacctgatttaaaattagtactg
atgtctgccactatcaatatagaactttttagtaattattttgcaaaggaaaatgtgaaa
gtaatagaggttcctggaagattatatcccattcagttgttgtatcgccctataaccgta
caagatcttgcatataaaaatgatcgatttaatcctagtccatatgtgcaaataatgcaa
ataattgatcaaaaatatccaattaatgagaagggtgacttattaatattcttaagtgga
atcagtgaaattactgcagttgtagatgctgctaaggaatatagtatgaagaaaaataat
tggatagttttgccacttcacagtactctctctattgttgaacaagacaaggtttttgac
tatgcacctgagggtgttaggaagtgtattgtggcaactaatattgcagaaacctctatt
actatcgatggaatcagatttgttgctgatagtggaaaagtgaaagaaatgagttatgat
ccattgtgtaaaatgcaaagattgaaagaattttggataagcaaagccagtgcagaacaa
aggaaaggaagagcaggcagaactggacctggggtttgttatagaatttactcggaagaa
gagtacaaaatattggaaaaatactcaacacctgaattacagcgcgtacctttagattct
tcactattgcaaatgatagcgatgggacttcctgatgcgcgcaaatttccatttatagag
tcaccacctgccagtagcatagaaaacgctatatcatccttaaaagatcacggtgcgctt
acggataacgaaaaaatcacgtgtatcggtaaaactttggcacgactacccgttgatatt
gtaataggaaaaatgttaataatgggatccatttttcatcaagtggaacctgtgttatca
ttggcagctgctctaagtatacaaacaccatttactaacagagcttatagagacactgaa
tgtgagacatcgagaaaaaagttggaatctgatcatggcgatccaataacgttactaaat
gcatttaaagaatggttggaagtgaaacaagaaaattctcaggaatatagaagtagtagt
aatagtagtagaaaatggtgcagaagaagaggtttggaagaacaacgattctatgaaatg
acaaaattaagatctcagtttaaagatttgctccaggattgcaatttacttaaaagtctt
ccagaaccaaattcttccatgacaagcgcagaacgcgcaatacggcatggagaattaaaa
cttttaaaatctcttaaaagaacttacaaacaaagtgaacctagaaaacgcaaacaatta
aaagttgaaacatttgacatacaatttgagaataatgatgaagataatgaagagctcgac
ataaaagacatagaatttcgaatgagaaacgattcgagtcaagtgcaaaatcttttaacg
gcatctactgcgtgtagttataaagatctaaccatgttgaaattgatattatgtagtggt
ttatatccacaattcgcttgtgccgacgagtttaattattgcaagtcaccaagtgaacaa
ttatttcacactaaagcgaaaccgtatgttgctttgcatccaatgagcttttttggaaac
catccacaagttttacaaatcgaagaagaggatgtaatggcaatagcaggatttaagagt
aaaactccagtaagctctaaaaatcagatattggcatatttatctctcttggaaactaca
aaaccatatttggtaaatactttaagaatgcctgctgcacaaacattactattatttgca
catgaaatagacacaaatagtacaatctccataatagcatgtgattcgtggttaatgtta
gaatttcctgttcctgatactggtcaagttttactgatgaaagctgtgaaattaagaaat
aaatgggattttttattaaatcaacaattacaaggatccgacaatactaacgatgaaaga
aaagattttagtaaaattgagcaaagtctcatgcaagaactaattgaatatatgcatact
acggtaccatacactataaaacggttgttaccagctgatctgaaaatgatatatgttggt
aatggcaataataacgcaaatatagagcctaatccttttcagtctgactttaaaagtata
ccaaatgtaattaaaggtggaacttatctgacagacaatattacatacaattgcataaaa
gaaactaattggagcgaacagttaattatagaaatgcaagaaactgaatggcattgtaaa
aattgcgatttacgaggtattctatcgagtatcgaaaaacttcaacatcaaaactcttgt
acgatcgcagatacgactagtgacgataaagagagtggaagtattacgcgtaaagctaat
agtcaagcatatgagtgccccaattgtttgttaacattataccttacacctatcgaaata
ttaaaacataaaaaatcacacattaaagcaagctga
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