Cardiocondyla obscurior: 139101896
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Entry
139101896 CDS
T10704
Symbol
Patr-1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139101896 (Patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139101896 (Patr-1)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139101896 (Patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
139101896 (Patr-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PLATZ
Motif
Other DBs
NCBI-GeneID:
139101896
NCBI-ProteinID:
XP_070511507
LinkDB
All DBs
AA seq
721 aa
AA seq
DB search
MADTFFGFDTTLGDNNLEDGLDCPVEEDELEEEEYDALNDETFGPDAAIGDWEEDHEKLA
EITESNRLHNQSSTSKKTISNINIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKPRLSL
PNACTVEELERGLIANRPPPGLNKPQTQQQQQKKSEGSLLFEALSLKEKLQVNGLPPPRF
PPGLGLPGAHPIVLPNIRVPHHQLIQHPRLLGLINQPGNVLRYPPPHLMLPQPVPRQPLH
GSYGFPPQLHPNLGGPQFLRPDHMMPAFPNNQTNHQQHSYSHLGNQRNQNRSYYHGEQQA
GHQPFFKNNQYPHRNHDRNNQRSYHHQHYSHGINGNASGEYEHSGKLAIKPHEKQWLINI
QLLQLNTIQPYIDDHYYVVFCDKRNKQHANQEQKDKKHHNNNGYHRDHRDWEPSSQAPSR
SAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSTSQSQQKDTKKTRQLLLEIER
LFTLQFKLEDLSNPLASIPELQQQEGESEVNATKTEPELISMILICIQQLIQDDKLASML
SIRKGKTLLLRFLPHLNVTEHNKQLRELWTAIFKGLAVIGRRDCHILTDFYSEFRRWLNT
VKDFDTILRLARALSDSATVHPVKNNSLTFALLNKFGISAIATMLEQAEQLLCVTDDSLP
SEWSNFIVTIVELIGDSPPCIAPCQPINTNTLNKHLNRISSLKLERYTALACLLTDANSL
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacttttttcggtttcgataccacgctcggagacaacaatctagaagatgga
ttagattgtccagtggaagaagatgaacttgaggaagaagagtatgatgcattgaatgat
gaaacatttggtccagatgctgctattggtgattgggaagaagatcatgaaaaacttgcc
gaaattactgaatcaaatcgccttcataatcagagttcaacaagtaaaaagactatttct
aacataaatatcgaagataacttatcacatttggtcttggataaggaaggaatagttcct
cgacctggtgtatggggtagtcctttaaatttatctcctccaaagccacggttatcttta
ccaaatgcctgtacagtggaagaattggaaaggggtcttattgcaaatagaccaccacca
ggtctcaacaaaccacaaacgcaacaacaacaacagaaaaagtctgaaggttcactcctt
tttgaggccctttctttgaaagaaaaacttcaagttaatggcctacctccaccacgtttt
ccaccaggactaggtttgcctggagcacatcctatagttttgcccaatataagagtacca
catcatcagttaatacaacaccctagattattaggcttaattaatcaacctggtaatgta
ttacgttatcctcctccgcatttaatgttgccacaaccagttccaaggcaaccccttcat
ggttcttatggtttccctcctcaactgcatcctaatttaggaggcccacagttccttcgg
ccagatcacatgatgcctgcatttcctaataaccaaaccaatcatcagcaacattcttat
tcacatttaggaaatcagaggaaccagaacagatcctattatcatggcgaacaacaagct
ggacatcagccattttttaaaaacaatcaatatccccaccgtaatcatgacagaaataat
caaaggtcttatcatcatcaacattattctcacggtattaatggtaatgcttcaggggaa
tacgaacactcaggaaaacttgctataaagcctcacgaaaagcaatggttaattaatatt
caattattgcaacttaatacaattcaaccgtacattgatgaccattattatgtcgtattc
tgtgataaacggaataaacaacatgcaaatcaagagcaaaaagataagaaacaccataac
aataacggctatcatagagatcacagagattgggaaccatcatctcaagccccttcaaga
tcagcatatacaccagctcaatttgagaactcattaggcaaacttcattgtagcagtgtg
acagcgccacgtaaactcattgatatggatgtcgtatcaaatagcgattctcaatctaca
tctcagtcccagcagaaggacactaaaaaaacccgacaattacttcttgaaattgaaaga
ttgttcacattacaatttaaactcgaagatttgagtaaccctctcgcttcgattccggaa
ctacaacaacaagaaggggaatctgaagtaaatgcgactaaaactgaaccggaattaata
agcatgattttaatatgtatccagcaattaatacaagatgataaattagctagtatgcta
agtattcgaaaaggaaagacattactgttacgttttttacctcatctgaacgtgacggaa
cataataaacagttaagagaattgtggactgctatatttaaaggattagccgtgataggt
cgtagagattgtcacatattgacggatttttattctgaatttcgaagatggcttaatacg
gtgaaagattttgataccatattacgattagcaagagcattatccgattcggctactgtt
catcctgttaaaaataatagtttaacttttgctcttctgaataagtttggtatatctgca
atagcaacgatgcttgagcaagctgaacaattattgtgtgtcacagatgattccttgcct
tctgaatggtcaaattttatagtgacaatagttgagctaattggtgactcgccaccctgt
attgcaccttgtcagccaattaacacaaatacgctcaataaacatctgaaccggatttcc
agtttaaaactagaaaggtacacagcgctagcgtgcttgttgactgatgccaattcatta
cgatag
DBGET
integrated database retrieval system
