Cardiocondyla obscurior: 139101937
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Entry
139101937 CDS
T10704
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139101937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139101937
03012 Translation factors [BR:
cobs03012
]
139101937
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139101937
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139101937
Translation factors [BR:
cobs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139101937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
AAA_22
NPHP3_N
nSTAND3
ResIII
AAA_19
ATPase
NB-ARC
AAA_14
PhoH
AAA_16
ATPase_2
NACHT
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
139101937
NCBI-ProteinID:
XP_070511564
LinkDB
All DBs
Position
LG04:complement(10547642..10554311)
Genome browser
AA seq
949 aa
AA seq
DB search
MSQRYRGSRNMLQSFSRHGRDEQTPSSASGRGRAYLHGRRPPGLTGKEIGMYYKNKSIEK
QKRNASEELRISAKVEQNIKSMLKNAKSFENVIPCENMKSGHGSQHSQIFDNQFKKKFFD
IIYGDIQDNLDKAMTVQSKLQRNSNLDTMLQNEYRQKQSQDAYKNMLKFRSKLPVHKKKS
EILQLIEDHQVVVISGETGCGKTTQIAQFILDDELEAGNGSVTRIVCTQPRRISAISVAE
RVAVERAEDLGTSVGYQIRLEKTPIRTQGSVMFCTTGILLQIMKQDPALKNFSHVILDEI
HERTTECDFIITLLKQVIPKRKDLKILLMSATLNAERFSTYYNNCPMIHIPGFTYPVEEF
YLEDVLSLVDFEFPAPPPEPKGYRKHLKRYKDQQQKKNEFQNMLDSHIRQLAADTKYKMH
VINQLRNPLSEDLSLELIESLVRYICNVKNPGAILIFLPGMMDISNLHKMMSSDRYPSNK
YVIYPLHSRMPTVDQKLIFKEPPNGVRKIIIATSIAETSITIEDVVYVIDCGKTKFGKFD
VKNNIQTLEPEWVTLANAKQRRGRAGRVKSGECYHMYTKAREMTFDQYPLPEMLRTRLEE
VILQIKTLQLGKVKEFLATVMDPPDLKAIELSLELLQTLNALDKYENLTPLGYHLAHLPL
DPRTGKMILWGALFSCVEPIFAIAASLTFKDAFYCPLGQEEEVRKRKSELSMAQYSDHIA
LAEALRRYETTRQRGSVRQFCRDYYLSFNTLKLLSEMKVQFAQYLYEMKFLDSENPKHVN
SNRNSNNIALIKAIVCAGLYPNIAVVRRFLKNGVGCWTPEDGEVRIHPSSINNKVDSFPS
RYLTYFTKQRSTAIYLHDTTCVSVPMLLFAGPNISIVREKNWYVINNFKFAESIICKQET
AEMIKELQRAFNSLLEHKVTNPATVSWSSYEGQLLNGIIELVSQTDDKY
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacgatatcggggctctagaaacatgttacaatctttctcacgacatggcaga
gatgaacaaacaccgtcatcggcatctggacgtggaagagcgtatttgcacgggcgaaga
cctcctggattgacaggaaaagaaatagggatgtattataaaaataaaagtattgaaaaa
cagaaaagaaacgcttcagaagagcttagaatatcggcaaaagtggagcaaaatattaaa
tccatgttaaagaatgcaaaaagctttgaaaatgtgattccttgtgaaaatatgaagtca
ggacatggcagtcagcatagtcagatattcgataatcaattcaaaaaaaaatttttcgat
attatatacggtgatatacaagacaatcttgacaaagctatgactgtacagtcaaaattg
caaagaaatagtaatctagacaccatgttacaaaatgaatacagacaaaagcagagccag
gatgcttataaaaatatgttgaagtttcgatccaagttaccagtacataaaaaaaagtct
gaaatattacaattaattgaagatcatcaagttgtagttattagtggagaaacaggatgt
ggcaaaactacgcaaattgcacaatttatattggatgatgaattagaagctggaaatggt
agtgtcactcgaatagtttgtacacaacctaggagaatctcagctatttctgttgctgaa
cgtgtagccgtggaaagagcagaagatcttggaacatctgtcggttaccagatacggctt
gaaaaaacgcctatacggacgcaaggaagtgtgatgttctgtactaccggtatattgtta
caaattatgaagcaagatccagcattaaaaaatttctctcatgtaatattggatgaaatt
catgaacgtaccacagaatgtgattttattattacgttattaaaacaagttattccgaaa
agaaaggacctaaaaattcttttaatgagtgcaacgttgaatgccgaaagattttcgaca
tattataacaattgcccaatgatacatataccaggatttacttatccagtagaagaattt
tatttagaagatgttttgtcacttgttgatttcgagtttcccgcacctccaccagagcct
aaaggttacaggaaacacttaaagagatataaagaccaacaacaaaaaaaaaatgaattc
caaaatatgttagattctcatatcagacaacttgcagctgatacaaaatacaaaatgcac
gttattaatcagttacgaaatccgttaagtgaagatctttcattggagctcatagaaagt
ttagtcagatatatttgtaatgtaaaaaatcctggagctattcttatatttttacctggt
atgatggatatatcgaatttacataaaatgatgagttctgatcgttatccgagtaacaag
tacgtcatctatccccttcattcacgtatgccgacagttgatcagaaacttatttttaaa
gaaccacctaacggtgttcgtaaaataatcattgcaacttcgattgctgaaacgtcaata
actatagaagatgtcgtatatgtaatagattgcggaaaaacaaaatttgggaaatttgat
gtaaaaaataatattcaaactttagaacccgaatgggtgactttagctaatgcaaagcaa
agacgtggtagagctggcagagttaaaagtggagaatgttatcatatgtatacaaaagca
cgagaaatgacgttcgaccaatatccgttgccagagatgttgagaacgcgcttagaagag
gtaattttgcagataaaaaccttgcagctaggaaaagtaaaagaatttttagctactgtc
atggatccgccagatctgaaagctattgaattgtccctcgagttacttcaaactcttaac
gctcttgacaaatatgagaatttaacccctttgggttatcatttggcgcacttgccactt
gaccccagaacaggaaaaatgattttgtggggtgcattgttttcctgtgtcgaaccgata
tttgctattgctgctagtctcacgtttaaagatgccttctattgtccattaggacaagag
gaggaagttagaaaaagaaagtcagaactcagcatggcacaatatagtgatcatattgct
ctcgcagaagctttgagaagatacgaaactacacgtcaaagaggttctgttcgtcaattt
tgccgagattattatctctctttcaatacgttaaagcttctctctgaaatgaaagtgcaa
tttgcacaatatttatatgagatgaaatttctggatagtgaaaacccaaaacatgttaac
tctaacagaaattcgaataacatagcattaataaaagccatcgtatgtgcaggattatat
cctaacatcgccgttgtaaggcgatttttaaaaaatggagtgggctgttggacaccagaa
gatggtgaagtacgaatacatccgtcgagcataaacaataaagttgattcatttcctagt
cggtatttaacgtatttcacgaagcagcgttccaccgccatatatttacatgatactacg
tgtgtaagtgtaccaatgttattatttgccggaccaaatatatcgatagtacgagaaaag
aattggtacgtaattaataacttcaagtttgccgaaagcattatctgtaaacaagaaact
gcggaaatgataaaggaacttcagcgagcttttaatagtttactggaacataaggttaca
aatccagcaacagtatcttggtcaagttatgagggacagttattaaatggtattattgaa
ctggtatctcaaaccgatgataagtattag
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