Cardiocondyla obscurior: 139102012
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Entry
139102012 CDS
T10704
Symbol
Fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139102012 (Fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139102012 (Fand)
03041 Spliceosome [BR:
cobs03041
]
139102012 (Fand)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139102012 (Fand)
Spliceosome [BR:
cobs03041
]
Complex B
Other components
Prp19-related factors
139102012 (Fand)
Complex C
139102012 (Fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_15
TPR_12
RPN7
PPR
TPR_10
Mad3_BUB1_I
NRDE-2
ARM_TT21_C
DHR-2_Lobe_A
BNIP2
Motif
Other DBs
NCBI-GeneID:
139102012
NCBI-ProteinID:
XP_070511726
LinkDB
All DBs
Position
LG01:complement(3041000..3045280)
Genome browser
AA seq
851 aa
AA seq
DB search
MLERKDDEGNLYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNSNSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTKE
CYITRTRQVFDRSLRALPITQHHRIWPIYINFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSMNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEEAAKNPTDEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVTEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDEAETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYVPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYVHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQVSDVPIDAMRLLDSKVAPSTDNVTDIKGGIKF
VRGVTERDGRPESHVNNPDEIDINVDDDDNDDDDDDDNDNDAEIEEDVPIEKQTIPSQVF
GSLKTAESEES
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcgtaaagatgacgagggaaacttatatgcctttaatgaagaggatttacca
tatgaagaggaaattttacgcaatccatattcggtgaaacattggcaacgttatattgat
cacttaaaaaattcgaacagtaagaatttaaacgtcgtgtacgaacgagcgttgaaagag
cttccgggcagttacaagctatggtacaattatcttcgacaacgcgtgagccaattaaaa
ggtcgatgcataacggatccattgtacgaagatgttaacaatgcatttgaacgtgctcta
gtatttatgcataaaatgccacgtatatggatggattactgcacactaatgactaaagaa
tgctatataacacgaacgcgtcaagtatttgatcggtcactaagagcgcttccaatcact
cagcatcatcgtatatggcctatatatattaattttttaaagaaacacaacgtttatgaa
actgcagttagagtatttagaagatatttaaagttggcaccagaagatacagaagaatat
atagaatatttgatatcgattggaagactcgatgaggccgctgtcaagctagcacaaatc
gtcaatcaggatgatttcgtatcgaaacacggaaaatctaatcaccaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttcaaaaattaagtctatgaacgtagatgctatt
attagaggtggtttaagacgttatacggatcagttgggacctttgtggaattcattagca
gattattacgttcgaagtggtctctttgaaagggcgcgggatatctatgaagaagctatt
cagactgttactaccgtcagagattttacacaagttttcgatgcatatgcacaatttgaa
gaactcagtcttaagaaacttatagaagaagcagcaaaaaaccctactgacgaagatgac
ataaagttggaattgagattagctcggttggaacatcttatggaaagaagactattattg
cttaattctgttttattacgacagaatccacataatgtgacagaatggcataagagagta
aaactttacgaaggacagccacacgagatcataaatacatacaccgaagccgtgcaaacg
gtgcagccacagttggcagttggcaaattgcacacattatgggttgcatttggcaaattt
tacgaggaaaacggacaaatagaggatgctagagtggtatttgaaaaagcaacgcacgtt
ccatataccaaggtagatgatcttgcgtcggtatggtgcgagtgggcagaaatggaaatt
agacacgggaattgtaaagaagctttaaaacttatgcatcgcgctactacaatgccagct
agaaaagtagcatatcacgatgaagcagaaacggtacagatgagattgtacaaatctttg
aaagtatggtctatgtacgcagatttggaagaaagtttcggaacattcaagacttgtaaa
gcggtgtacgataaaataatcgacttaaaaattgcgactccgcaaattatcatcaattac
ggactgtttttggaagaaaacaattactttgaagaagcatttagggcatatgaaaaaggt
atcgccttgtttaagtggcctaatgtttacgacatttggaacacatacctcacaaaattt
ttgaaacgttacggtggaactaaactagaacgtaccagagatttgtttgagcaatgttta
gaatacgttccaccgaagtatgctaaagccttgtatttattgtacgcaaagttggaagaa
gaacatggcttggcgagacacgcgatgtctgtgtatgaacgtgcgacaagtgctgtcctc
ccggaagaaaaatttgacatgttcaatatatacataaagaaagctgccgatatatatggt
gtaccaaaaactcggcaaatatatgaaaaggctatcgaagtattgaatgacgaaaacaca
agagaaatgtgtttacgatttgcagaaatggaaacgaaattgggagaagtggatagagcg
agagcgatatacgtccactgtagccaaatatgcgatccaagagtcacatctaacttttgg
caaatttggaaagaattcgaagtcaggcatggaaatgaggatacaatgcgtgaaatgctt
cgaatcaagcgtagcgtgcaagccatgtacaacacgcaagtaaatatgatgtctgcacaa
atgttgaataatgcatctaatcaagtatcggatgttccaattgatgctatgcgtttatta
gatagtaaagttgcaccaagtacagataacgtcactgatattaaaggaggcattaaattt
gtacgtggcgtaacggaaagagatggtagaccagaatcacatgtaaataatccagatgag
attgatatcaacgtagatgacgacgataatgacgacgacgacgacgatgataatgataat
gatgcagaaatagaggaagacgtaccgatcgagaagcaaactataccgtcgcaagtattt
ggtagtttaaagacggctgaaagtgaggaaagctga
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