Cardiocondyla obscurior: 139102135
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Entry
139102135 CDS
T10704
Symbol
Dnalig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03030
DNA replication
cobs03410
Base excision repair
cobs03420
Nucleotide excision repair
cobs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139102135 (Dnalig1)
03410 Base excision repair
139102135 (Dnalig1)
03420 Nucleotide excision repair
139102135 (Dnalig1)
03430 Mismatch repair
139102135 (Dnalig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobs03032
]
139102135 (Dnalig1)
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139102135 (Dnalig1)
Enzymes [BR:
cobs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139102135 (Dnalig1)
6.5.1.6 DNA ligase (ATP or NAD+)
139102135 (Dnalig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
139102135 (Dnalig1)
DNA replication proteins [BR:
cobs03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
139102135 (Dnalig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
139102135 (Dnalig1)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
139102135 (Dnalig1)
NER (nucleotide excision repair)
Other NER factors
139102135 (Dnalig1)
MMR (mismatch excision repair)
Other MMR factors
139102135 (Dnalig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
139102135
NCBI-ProteinID:
XP_070511940
LinkDB
All DBs
Position
LG04:complement(1006106..1011521)
Genome browser
AA seq
968 aa
AA seq
DB search
MLKFLATCSRLSSMALPVQRLELAVTARSRFVVFNWICTTNSHNLSDKQEDRDASNNIQE
NGKRQRDTSDSERSPPLKKQNVKHTKSKAIAKTPPSSAKPSRKLGTTPKNKLNKSLPGSS
KKTEKTKLKDSSTKKNKKKENKAVNDVVEEINDIQIINDTVESKKTDKKSTSLKKSKSDK
IAEVKKTEKVKKKRARIIEPVDSSDDEVHLPLSESPKKLNVDDEEEQVENIDESKESIVV
LSDDTNECALDEEKNNEKSKESTPERTSRTTSKDESLKEKKVEKKNKKVENFFTLKQKDE
TKDDKAGNAKSSNQPYNPRASTYHPIDDACWKRGDKTPYSAFARTLEIIEETSARLKIIE
ILSNYFRSVIVLSPMDLLPSVYLCLNQLAPAYEGLELGVADTNLMKAIAQCTGRTLAQIK
ADVQEVGDLGIVAEGSRSNQRTMFQPAPLMVSNVYSKLKEIAQMTGNASLAKKLDKIQTL
FVACRNMEAKYLIRSLAGKLRIGLAEQSVLQALALASAMTPPEQSYPPEILNMSKKMSSD
HFKEKYDETALILKTTYCECPNYDLIIPVLLKDGINALPNKCKLTPGIPLKPMLAHPTKG
VQEVLTRFEGLKFTCEWKYDGERAQIHVADNGQVNIYSRNQENNTSKYPDIIKRFANTRG
DLVKNCILDCETVAWDNEKKQILPFQILSTRKRKDANEEDIKVQVCVFMFDLLYLNDEPL
VKETFAKRRELLKQHFKEVDGEWKFANSMDTSTMEEVEVFLDESVKGNCEGLMVKTLEKD
ATYEIAKRSRNWLKLKKDYLDGVGDTLDVVVIGGYIGKGKRTGTYGGFLLACYDQENEEY
QSICKIGTGFKEEDLENHSKFFKDHVIPQAKSYYRFDSSHEPDHWFEPIQVWEIKCADLS
LSPVHRAAIGIVDPEKGISLRFPRFIRIREDKTYEQATTAQDVADMYNNQEQIKNKTPVS
KTTEEDFY
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagtttcttgccacatgctcacgcttgagctcaatggctttaccagttcaacgg
ctggagcttgcagttacagctcgcagtcgatttgttgtttttaattggatatgtacaacc
aacagccacaatttgtcggacaagcaggaggatcgggatgcgtcaaataacattcaggag
aatggcaaacggcaaagagacaccagtgattctgaaaggtctccaccgttaaaaaaacag
aacgttaaacatacaaagtcaaaagcgatcgcaaaaactcctccatcaagtgcaaagcct
agtagaaaattaggaactactccaaagaataagttgaataaatctttacctggatcatcg
aaaaaaactgagaagacaaaattgaaagattcatctactaagaaaaataaaaagaaagaa
aataaagctgttaacgatgttgtagaagagatcaatgatattcaaataataaatgataca
gttgagagtaaaaagacagataaaaaatctacttctttaaagaaatctaagtctgataaa
attgcagaagtaaaaaagactgaaaaggtgaaaaaaaaacgggccaggattattgagccg
gtagattccagtgatgacgaggtccatctgcctctatctgaaagtccaaaaaaattgaat
gtagatgatgaggaggaacaagttgaaaatatagacgagtctaaagaaagcatagttgtt
ttaagtgacgatacaaacgaatgtgctttggacgaggaaaaaaataatgaaaagtcaaag
gagtctacacctgaacggacatcacggactacttctaaggacgaaagcttaaaggaaaag
aaggttgagaaaaaaaataagaaagtggaaaacttttttacacttaaacaaaaagatgag
accaaagatgacaaagcgggtaatgcgaaatcctctaatcagccatacaatcccagggca
tctacttatcatccgatagacgatgcatgctggaaacgaggagataaaactccgtatagc
gcatttgcgcgtactttggagataatcgaggagacgagcgcaagattaaaaataatagag
atattgtcaaattatttccgatcagtcatagttctaagccctatggaccttttgccgagc
gtttatctatgtcttaatcaattagcaccagcatacgaaggacttgagcttggagttgcg
gatacaaatttaatgaaagcgatagcgcaatgtactggtagaaccctcgcacaaatcaaa
gccgacgttcaagaggttggtgatttaggtatcgtggcggaaggtagtagatctaatcag
agaactatgtttcaaccggcaccgttgatggtttccaatgtgtactctaagttgaaagaa
attgctcagatgacgggaaatgcgtccttagcaaaaaaattggataagattcaaacgcta
tttgttgcgtgtcgtaatatggaagcaaaatacctcattagatcgttagctggaaagctt
cgtattggattagcagaacaatccgttttacaagcattggctttagcttccgctatgaca
ccaccggaacaaagttatccacctgaaattctaaacatgagcaagaaaatgtcgagcgat
cattttaaagaaaaatacgacgagacagcacttatattgaaaacaacgtattgtgaatgt
ccgaattatgatcttataattcccgttctattaaaagatggaattaatgctttgccgaac
aaatgtaaactcactcctggaataccattgaaacctatgttagcacatcctactaaaggt
gttcaagaagttttgacacgatttgagggtttgaaatttacttgcgaatggaagtacgat
ggggaaagagcgcagatacacgtcgcggataatggtcaagtcaatatatacagtagaaat
caggaaaacaacactagcaagtatccagatattattaagcgatttgcgaatactcgcggc
gatctggtgaaaaattgtatcctcgactgtgagacggtcgcttgggataacgagaaaaaa
cagatcttaccgttccaaatactcagtacgagaaagcgaaaggatgctaatgaagaggat
attaaagtacaagtgtgtgtatttatgttcgatctattatatttaaatgatgaaccattg
gtgaaggaaacattcgcgaagcgtcgtgagttattgaaacagcacttcaaggaagtggat
ggcgaatggaaattcgctaatagcatggatacctcgacgatggaagaggtggaagtcttt
ttggatgaatctgtgaaaggcaattgcgaaggcttgatggtgaagacattggaaaaggat
gcaacttatgaaattgcaaagcgatcgagaaactggttgaagctgaagaaggattatttg
gatggtgtcggtgacacgctcgacgtggtcgtgatcggtggttacatcggtaagggaaag
aggactggcacctacggtggttttctcttagcctgttatgatcaagaaaatgaagaatat
caaagcatttgtaagattggtacaggattcaaagaagaggatcttgaaaatcacagtaaa
ttcttcaaagatcatgtaataccacaagcaaaatcgtattatcgctttgatagcagtcat
gaacctgaccattggttcgaaccaatccaagtttgggaaatcaagtgtgctgatctctct
ctttcgcccgtacatagggcggccatcggaatagttgatccggagaagggaatatctcta
aggtttccgcgattcatcagaattcgtgaagataagacctacgagcaagcgactactgct
caagacgtagcggacatgtacaataatcaagagcaaattaaaaataaaactccagtctcg
aaaacgacagaagaagatttctattaa
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