Cardiocondyla obscurior: 139102497
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Entry
139102497 CDS
T10704
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
cobs Cardiocondyla obscurior
Pathway
cobs04512
ECM-receptor interaction
cobs04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
cobs04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139102497
Glycosaminoglycan binding proteins [BR:
cobs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139102497
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139102497
NCBI-ProteinID:
XP_070512513
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Position
LG05:complement(2044307..2085749)
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AA seq
1846 aa
AA seq
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MRPRAAATSGIIGDASRGISRPVPLVLQIICVLALLVHTPLKLPFAEAVICKDSYKCNCK
GIKGQSGYPGIAGPQGTEGLPGDIGPDGPPGPKGEKGAGGEYGATGEKGYRGDVGIQGFV
GAPGLSGNPGLPGVMGPDGLDGCNGTDGRAGAPGIPGVYGARGPPGQLGEYGFPGEPGDG
GINSKGTKGIRGDPGIDGLEGYQGQKGFIGDTGYPGQTGDFGWPGNSGLRGMQGDRGDTV
YGVAGQFGEQGDRGEPGPPAKESEFKRENATVVKGPPGPKGMRGIYGDRGRKGEMGAKGP
QGRPGFLGIKGVKGEQGGDGPRGKQGVEGPPGPAGEKGEKGAPGFAGMPGPDGLDGESGE
EGNRGPPGRQGAEGEPGLYIPELDEIIAGNIGIQGDLGPPGEAGESGTPGLPGKVGFIGP
PGPPGPSGIPGQAGIKGSSIKGEQGDDGLPGTMGPQGPSGLPGLPGGLGAKGFPGITITG
PPGLDGFSGLPGFPGPPGDRGDPGPPGEKGFPGKGIRIRGPTGERGLPGNPGIAGPDGWP
GFSGPKGDKGIHGDDCGVCSPGLPGEKGERGESGLDGYPGASGFPGLPGPRGYKGIQGNR
GPQGPAGIEGDSGRPGIAGPQGPKGEHGRIFFPTGEKVNSPPGDFGEKGLPGPEGIRGPR
GQPGLIGDTGVPGPKGDKGEHGLPGLPGRDGLPGWNGIPGEKGENTTIPIEFLRGDPGLP
GSPGIKGIQGDRGKKGEPGPTADFTIDVQGDKGFKGPVGSPGETGAKGFEGRPGDEGLPG
FPGEQGSPGLSLQGSIGLKGYPGMPGDQGPRGTPGSPGSQGPVGFPGRVGNKGERGDPGT
NLTYGEIGERGSHGSKGEFGDSGLQGFPGRPGEDGVKGTKGGKGAPGFEGLPGLQGAKGQ
RGDSVQGDRGFPGIPGQTGLPGRIGDVGTRGPDGPFGFDGMKGLKGEIGFIGRRGDDGDI
GPQGYQGMHGLQGLPGAPGEKGEVGESGDSGPRGWPGFDGIDGAVGPKGEIGDAGIPGLP
GVTGPPGLKGLPGDPGYEGFPGPPGENSFSGPQGEVGEPGFMGEIGPPGLAGFDGRPGLP
GEPGEGKDGFNGLPGEKGDLGFDGYNGIPGPKGEIGDMGPDGFKGERGEQGFPGRPGASG
ISGRHGVKGERGPSGPPGFDGLKGKPGVDGDPGIMGKPGMPGDSGLRGGPGVMGAPGPKG
YVGEPGLPSYAFAEKGEYGNRGHDGFSGIKGQQGEPGYMGIPGRKGLIGDRGYPGPDGFE
GLPGFPGLKGDQGPRGAPGLPGEFPEPGEPGRPGLDGTPGIPGIPGQKGAPGEYGPNGPK
GISGDIGHSLRGPKGMVGEPGLRGFVGFPGMPGLEGLQGFPGTPGPKGYRGEPGIAAGST
KGQSGEPGWPGIDGRIGPKGMQGDSGLPGFDGLPGPKGERGDIGESGLPGIPGPSGPQGP
KGDPGLNPFPPFPRRGLPGDVGVPGLPGFPGQQGIMGEPGKDGLPGRQGETGMIGFPGPQ
GPDGKDGPPGYQGSPGTTGRQGQPGFRGAPGIPAPSGIGPRNRGFYFARHSQSEMIPFCP
RNTVKLWEGFSLLHTMGNGRAFAQDLGAAGSCIRRFSTMPFLFCNLNNVCDYANRNDYSY
WLSTTEPMPMMMTPIPAPEVGRYISRCSVCEASTRVIAIHSQTMAIPECPGGWDEIWIGY
SFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNYFSTATSYWLATIRDDEM
FRKPLQQTLKADYTSRVSRCAVCLRRQVTEVLKPFTSNNERAPNNWGIAPPAPPPPPRNP
PNYDSRVSPNRGRYTNNYNRRVPYNRRRGRVRGRQGERPTESPNNL
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccagggccgcggcgacgtcaggaatcatcggcgacgcgagccgcggcatctcg
cggccggtcccgctcgtcctgcaaatcatctgcgtcctcgccctgctggtccacactccc
ctgaagttaccgttcgccgaagctgtgatctgcaaagactcgtacaaatgcaattgcaaa
ggaataaaagggcagtcgggatatcctgggatagctggacctcaaggaacggaagggctc
cctggtgacatcggacccgatggaccccccgggcccaaaggtgaaaagggggcgggtgga
gaatacggagccaccggagagaagggctaccggggcgatgtcggtatacaaggatttgtg
ggagctccaggactctccggcaatcccggcctacctggcgtgatgggtccggatggactc
gacgggtgtaacggaaccgacggtcgcgctggtgcaccgggtatacccggagtttacgga
gcccgtggtccaccaggacaactaggcgaatacggctttcccggggaaccaggcgacgga
ggtatcaactcgaagggtaccaaaggtattcgcggagaccctggtatcgacggactcgag
ggctatcaaggacagaagggattcatcggtgatacggggtatccaggacagacaggcgac
tttggttggccaggtaattctggcttgcgaggtatgcaaggtgatcgcggtgacaccgtg
tatggtgttgctggtcaatttggtgaacagggagatagaggagagcctggaccgccagct
aaagaaagcgaatttaagagggaaaatgcgacagtcgtcaaaggaccgccggggccgaaa
ggcatgaggggtatctatggcgatcgtggtcgtaagggagagatgggcgccaagggtcca
caaggtcgaccaggttttttgggtatcaaaggagtgaaaggtgaacaaggcggcgatgga
ccgagaggtaaacagggtgtcgagggtcctccaggcccagcgggcgagaagggtgagaaa
ggagctccaggtttcgcggggatgcccggtccggatggtcttgatggagaatcgggagaa
gaaggaaatcgtggtcctcctggtagacaaggagccgaaggagaacctgggctgtatatt
ccggaacttgatgagataatcgctggaaatatcgggattcaaggagatcttggtcctcct
ggtgaagcgggtgagtcaggaacaccaggtctgccaggaaaagtcggttttataggacca
ccgggtccaccaggaccttcgggcattcccggtcaagcgggaataaaaggctcgtccata
aaaggagagcaaggagatgatggcttgccaggaactatgggaccgcaaggaccatctgga
ttacctggtctacctggaggtttgggagccaaaggatttccgggaataacgataactgga
ccgccagggctagacggtttttcaggtcttccgggatttccaggccctcctggcgatcgc
ggtgatcccggtcctcctggagagaaaggttttcctggaaaaggaattagaattcgtggg
ccgacgggagaacgaggtttgcctggaaatcctggtatcgctggtcctgacggttggcct
ggtttttccggtcctaaaggtgacaagggtattcatggagacgactgtggtgtatgtagt
ccaggactgcccggggaaaaaggagaaaggggtgaatctggtttagacggatatcctgga
gcttcaggattccctggcttacctggtccacgtggatacaagggaatacaaggaaatcga
gggccgcaaggaccggcggggattgagggagatagcggaagaccgggcatcgcgggacct
caaggtcctaaaggagaacacggaagaatattctttccaacaggcgagaaagttaacagt
ccgcctggtgattttggcgaaaaaggcttacctggtcccgaaggaattagaggcccgcga
ggacaaccgggactcattggtgacacaggcgtaccgggtccgaaaggagataaaggtgaa
catggtcttcctggactgccgggacgagacggtttaccaggatggaatggcattcctggc
gaaaaaggtgaaaatactacgataccaattgagtttttgcgtggagatccgggattgccc
ggaagcccgggaatcaaaggaattcaaggagatagaggtaaaaaaggagaacctggtcca
accgcagatttcactatcgatgtacaaggcgataaaggcttcaaaggtcctgtaggatct
cccggcgagactggtgcgaaaggtttcgaaggacgtcccggtgacgaaggtcttccaggt
ttccccggcgaacaaggttctccaggactttcacttcaaggttctattggattgaaagga
taccccggaatgccaggagatcaaggccctcgaggtacgcctggctcaccaggatctcag
ggacccgtaggttttccgggccgggtcggcaacaaaggagaacgaggagatccaggcaca
aacttaacatatggcgaaattggagaacgtggatcgcacggttcaaaaggtgaattcggt
gattctggtctacaaggatttccaggccgaccgggagaagatggagtgaagggtactaaa
ggtggtaagggagcgcctggtttcgaaggattgccaggacttcaaggagccaaaggtcaa
cgtggagacagtgtacaaggtgatcgtggattcccgggaatacctggccagactggattg
cccggaagaatcggagatgttggaactcgcggccctgacggacctttcggtttcgacgga
atgaagggcttgaaaggagaaatcggatttatcggacgacgtggtgacgatggcgatata
gggcctcaaggataccaaggaatgcatggtttgcaaggtcttccaggtgctccaggagaa
aaaggagaagtcggcgaaagtggcgactcaggacctcgaggttggcctggtttcgacggt
atagacggagcagtcggtcctaaaggagagataggagacgcgggaatccctggtttacca
ggagtcacaggaccacctggattaaaaggtctccctggagatcctggttacgaaggcttc
ccggggccgcctggtgaaaattcgtttagcggacctcaaggtgaagtgggcgagccaggt
tttatgggagaaattggaccacctggtctagctggatttgacggacggccgggtttacca
ggagagccgggagaaggcaaagacggcttcaacggcttgccaggagagaaaggtgatctt
ggttttgacggatataatggaattcccgggccaaagggagaaattggagatatgggtcct
gatggattcaaaggcgaacgaggtgagcaaggctttccaggaagaccaggcgcatctgga
atatctggtagacacggtgtgaaaggtgaaagaggcccatctggaccgcccggatttgac
ggtttgaaaggaaaacctggtgtcgatggcgatccgggtataatgggcaaaccaggaatg
ccgggtgactctggtctaagaggagggccgggtgttatgggtgctcctggcccgaaaggt
tatgtaggtgaaccggggttaccgtcttacgcattcgcggagaagggcgagtatggtaat
cgtggccacgatggtttctccggtattaaaggacaacaaggtgaaccaggatatatgggc
atacccggccgtaagggtttaattggagatagaggatatccaggtccagacggtttcgaa
ggattacccggttttcctggtttaaaaggtgaccaaggacctcgtggagctccaggactt
cctggtgagtttcctgaacctggcgagcctggtcgccctggtctcgatgggacgcctgga
atccccgggattcctggacaaaaaggagcgcctggcgaatatgggccaaacggacctaaa
ggaattagcggtgatataggccacagtcttcgtggtcctaaaggaatggtcggagaacca
ggtctgcgaggattcgttggcttcccgggtatgccgggtttagaaggattgcaaggcttc
cccggaacacctggaccgaaaggttaccgtggagaaccaggaatagctgcgggtagtaca
aaagggcaatccggtgaacctggatggcctggaatcgacggtcgaatcggaccgaaggga
atgcaaggtgattctggtctacctggctttgatggattaccaggaccaaaaggagaaagg
ggagatatcggcgaatctggcttgcctggaatacctggtccttctgggccacaggggccg
aaaggagaccctggtttaaatcctttccctccattcccgaggcgaggacttcccggtgat
gtaggagttcccggattaccaggtttccctggacaacagggaataatgggtgagcctgga
aaagacggtctgccaggacggcaaggcgaaacagggatgattggatttcctggaccacaa
ggtccggacggcaaagatggacctcccggatatcaaggatctcctggaacaaccgggcga
cagggacaaccaggttttcgtggcgcacctggcatacctgccccaagtggaattggtcca
agaaatagaggattctactttgctcgccactctcaatccgagatgataccgttttgtcca
agaaataccgtgaagctctgggaaggattttcactattacatacgatgggtaatggacga
gccttcgcacaggatcttggcgctgctggcagttgcattagaagattctccactatgccc
ttcttattctgtaacctgaataacgtgtgcgattacgccaatcgtaacgattatagctac
tggcttagtacaaccgagcctatgccgatgatgatgacaccaataccggctccggaagtt
ggtagatatatatcaagatgttctgtctgcgaggcatcgacgagggtaatagctattcac
agtcaaactatggcaatacccgaatgcccgggtggctgggacgaaatttggattggatac
agtttcctcatgcatagagatgcaggcgcggacggtggcggtcagtccctcgtgtcgccc
ggatcttgtctggaggagttccgcgttagaccgtttatcgaatgccgcggtcttggcaca
tgcaattacttctccacggcgacatcgtactggctggcgaccattcgcgacgacgagatg
ttccgcaagccgctgcagcaaacgctcaaagccgattacacgtcccgggtgagccgttgc
gccgtatgcctccgacgacaagtcaccgaggtcttgaaacccttcacctcaaacaacgag
cgagcgcccaataattggggcatcgctccaccggcacctccaccgccaccgcgcaatccg
ccgaattacgactccagagtatcgcctaaccggggaagatacaccaacaactacaacaga
cgcgtaccttacaatcgcagaagaggccgtgtgcgcggacgacaaggagaacggccgaca
gagtctcccaacaatttgtag
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