Cardiocondyla obscurior: 139102721
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Entry
139102721 CDS
T10704
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03013
Nucleocytoplasmic transport
cobs03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139102721 (Upf2)
mRNA cycle factors
P-body specific factors
139102721 (Upf2)
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GFIT
Other DBs
NCBI-GeneID:
139102721
NCBI-ProteinID:
XP_070512930
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Position
LG05:9437370..9442549
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AA seq
1200 aa
AA seq
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MEYGCIVVCHNITSASFWTRHIQQETSEIISSNNFFAQEYSTMSENANESAAAEKETAAE
EQPNAVSEEDRQFLTEYVRETEQRLATKEEIRAANLNPTRPPDASFSKLDSSLKRNTTFV
KKLKNFSMAQLDTVLKDMTNLNLTKYVSEVATALVDAKIKMTDVAPAIRVCSFLHQTYAE
FSTHFFENWQRILSLKIGDKITNPSKLRVDLRFYAELVNAGIFTHKQGLPLLGSVLTVLI
NMDKEEHNNASIILSFCRHCGEDYAGLVPKKVRELSEKLNVSIPKSKLLSPDKQQNVRLL
LREYYNSLCKHMLKEHKELQAFEKQNRKILQTRGELSSERKEKLEALQVSYERLLTSVQS
FSDTLDESMPELPVDNEIKAETEETLKMINEGEDSTMLEDMWGDEETRRFYEVLPDLTVF
LPGSYLKDTPKDTPKTETAITEDALDEEIVFDELEESEKIEEPPEVEVEEPQVSNTSNKI
LLDAFLTHLPNCVNREMIDNAAVNFLMNLNTKHNKKKLVKALFGVSRIRQDLLPFYSRLA
AILYPVMPEIGNDLCQMLKQDFKYHVCKKDQINIESKIKVVRYIGELVKFKLYSKIEALY
CLKVLLNDFTHHHIEMACNLLEICGRYLFCSPDSHQRTKVYLEQMMRKKVVTALDSRYVT
IIENAYYFVNPPESTGGVTKKDRPPVHEFIRKLLYQDLSKTNTDKVLKWMRKLDWEDESV
SSYAIKCLTAAYNVKYPNIRCVGSLLAGLVAHYETIGPQVVDGVFEDIRLCMEINLPKFN
QRRIAMVKYLGELYNYRMVESGDIFRTLYLLITFGVSTDHSMPSVLDPPDHLFRIRLVCT
LLETCGQYFSGGSSKKKLDYFLVFFQNYFWFKYTDPVWTSENPFPVGLDYMYRDTLTMLR
PKMQLFQSYKEAQCAVEELRNTLYPTLGNPTVDDTATEGENEMGVILEGDEEAVMTGNGS
GDAKGIAELHFEESEDCSEAQSEEEWTADAERDDAMGTQENTQGDRSQSLSADGGTEGVI
VDVTEELNAALPAGPRRVSCPEDDDFLSALDKMVSDNIQDRMRDSVKPQQVDISVPLHVK
STKKTYEQLQERPTDNSTVDFILMLRKGNKQQYKNLAVPVSSELAMNLRNREQEQKEEKE
RVKRLTLNITERQEEEDYQETMNQSTRPVTVNLNRERRQKYNHPKGAPDADLIFGPKKIR
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggagtatggatgcattgtcgtctgccataatataacctcagcaagtttctggacgaga
cacattcaacaggaaacaagcgaaataatttcgtcgaataatttcttcgcccaagaatat
tccacaatgtccgagaacgcgaatgaatcggcagcggctgaaaaagagactgccgctgaa
gagcagccgaatgccgtctcggaggaggaccggcagttcttgacagaatacgtgcgcgaa
accgaacaaagactcgcgacgaaagaagagattcgcgcggctaatctgaatcccacacga
cccccggatgcatcgttcagcaagctcgactctagcctcaaaagaaatactacgtttgtc
aagaagctgaagaattttagcatggcacagctcgacacggttttgaaagatatgacaaat
ttaaatcttaccaaatacgtgagcgaagttgcgaccgctttggtagatgccaaaataaag
atgactgatgttgcgcccgctattagggtgtgcagttttctccatcaaacgtacgccgag
ttttctacacatttctttgaaaattggcagaggatattgtcgttgaagatcggcgataag
atcacaaatcccagcaaactaagagtagatctgcgtttctatgctgaattggtgaacgct
ggaatatttacacacaagcaaggcttaccactacttggctcagtattgactgtattaatt
aatatggacaaggaagaacacaataacgccagcataatattaagtttctgccgacactgc
ggcgaagactatgccggtcttgtacctaaaaaagtgcgagagttatctgagaaattaaac
gtatcgataccaaaaagtaaattgttatcaccggacaaacagcaaaatgtaaggctgcta
ttgcgcgaatattataattccctgtgcaaacatatgctaaaggagcacaaagaattgcaa
gcgttcgaaaaacagaatcgcaaaatactacaaactagaggggaattaagttcggaacga
aaggagaagctggaagctttgcaagtttcttacgagcgtttattaaccagcgtgcagagt
ttttccgacacgttagatgaatcgatgcctgaactgccggtggacaacgaaataaaggca
gaaacggaggaaacactgaaaatgattaacgaaggagaagatagcactatgctagaagac
atgtggggtgacgaagagacgagacgtttttacgaagtgttaccagatctgactgtcttt
ctaccaggctcttatttgaaagataccccgaaggataccccgaaaacggaaacagcaata
acggaagacgctcttgacgaggaaattgtttttgacgagttggaagagagtgaaaaaatt
gaggaaccacccgaagtggaagtagaagagcctcaggtatcaaatacaagtaacaaaata
ttgctggatgcttttctgacacatttgccaaattgcgtaaatcgcgaaatgattgacaat
gccgcggtaaatttcttgatgaatcttaacacaaagcataataaaaagaagctcgtaaaa
gctctttttggcgtttctagaattcgtcaggatctactgccgttttactctcgcttagca
gctattctttatccagtaatgcccgagatcggcaatgatctgtgccagatgttgaagcaa
gactttaaatatcatgtatgtaaaaaagatcagattaacattgaatcaaaaattaaggtg
gtccgctatatcggcgaactcgtcaaatttaaactctactccaaaatagaggcattgtat
tgtttaaaagttttattaaatgacttcacgcatcatcacatcgaaatggcctgcaatttg
ttggaaatttgtggccgatatcttttctgttcaccggattctcatcaaagaactaaggtc
tatctggaacaaatgatgcgtaaaaaagtagttaccgcgctcgactcgcgctacgtaacg
atcatcgagaacgcgtattattttgtaaatccacccgagtcgactggcggcgtcacgaaa
aaagacagaccccctgtgcacgaatttatcaggaaactattgtatcaagatctctctaaa
acgaatactgacaaagtgctcaagtggatgcgtaaacttgattgggaagacgagagcgta
tcatcttatgccataaaatgtctcactgccgcctacaacgttaagtatcctaatattcga
tgcgtaggaagtttattggccggtttggtagcccattatgaaaccatcggaccccaggta
gtagacggtgtattcgaagatattcgattatgcatggaaattaatctaccgaaattcaat
caacgacgtatcgccatggtcaaatatttaggcgagctgtataattatcgaatggtggag
agtggcgacatttttcgtactttatatttacttatcactttcggcgttagcacagatcat
tccatgccaagcgtgcttgatccgcccgatcatctttttcgtattcgtttagtgtgcaca
ttattagagacttgcggtcagtacttcagcggcggatccagcaagaaaaaactcgattac
tttcttgtatttttccagaattacttttggtttaagtacacagacccggtttggacgtcc
gaaaatccatttcccgttggactagattacatgtatcgcgacacattaacaatgttacga
cctaaaatgcaattgtttcaaagctacaaagaagcacaatgcgccgtcgaagagttacgt
aatactctttatccgaccttaggtaatcctaccgttgatgacaccgccacagaaggcgaa
aatgaaatgggagttattttggaaggcgacgaggaagcagtaatgactggaaatggtagc
ggagatgcgaaaggtatagccgagctgcatttcgaggaatctgaagattgctcagaggca
cagtcggaagaggaatggacagccgatgcggaacgcgatgacgctatgggtactcaggag
aacactcaaggcgaccgatctcaaagtctatccgcggatggtggcactgagggtgtaatt
gtggacgtaacagaggaattaaacgcagctttgccagccggaccgcgacgcgtaagttgt
ccggaggacgatgatttcctatcggcgttagataaaatggtctcagataatatacaagat
cgtatgcgagattcggtaaagccacagcaggtagatatctccgtgccactgcacgtaaaa
agtacgaagaagacatacgagcagctgcaggagaggccgaccgataatagcacagtagat
tttatattaatgttgagaaaaggtaataagcaacaatataagaatctcgcggtcccagtg
tcttccgagctggctatgaatcttagaaatcgcgaacaggaacagaaagaggagaaagaa
cgtgtgaagagattaactttaaatatcactgaaagacaagaagaggaagattaccaagag
actatgaatcaaagcacaagaccagtcaccgtaaacttgaatagagaacgacggcaaaag
tacaatcatcctaaaggagcgcccgatgccgatctcatttttggaccgaaaaaaattcga
taa
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