Cardiocondyla obscurior: 139102812
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Entry
139102812 CDS
T10704
Name
(RefSeq) cholesterol transporter ABCA5 isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
cobs Cardiocondyla obscurior
Pathway
cobs02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139102812
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cobs02000
]
139102812
Transporters [BR:
cobs02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
139102812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_23
RsgA_GTPase
AAA_29
DLIC
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
139102812
NCBI-ProteinID:
XP_070513059
LinkDB
All DBs
Position
LG01:12327034..12346465
Genome browser
AA seq
1785 aa
AA seq
DB search
MARSNDNGCGSKHTVRDAAVVSRGKAMSQQRESIGVINGGSVQQHSDESIGNSNGTATGI
SATSNASNHSQIEENRVNASHRMNSCGLYFSQLRAMLVRNLLLKKRDTRKTFMEVVLPLY
ILGALIVVKVMIPNPNFPAISTQRHEGDIFKLFNGYKNNTIAVVPNSTETLSFLNSMNSL
WRSMWDYPDKLPLNFMVFDTKDDLQAAYWRDPYSVPLAVIFEDPQPISQRLIYEIRTNPS
YSLPPSPTELYSAPICCRKNKTGHWMGDLLSIKTGESCPVNNYLHSGFLALQMIMDITKI
RLDVGNSDVTVPDIKLIMFPKDPYTADWMLAFRVVIPLYMVLALSQFVTYLLILIVGEKE
NKIKEGMKMMGLNDSVFWLSWFIIYSIFVFLLSAVGVVLLFTLQMFQHTHFLPIFLLVVL
YSFSVIMFAFMITPFFDKSRTAGVLGNFAITILSLMYFIQVFVSDSSSITYWFVSLISPT
AVALAMDKALVLDLQGEGVNFDNLWSGPGIPFGGSLIMMTLDIFLYGYLAYYLDSVIPSE
HGVKRPPWFCFLPGFWCKKKVQRVPSSNGESNSFIPGEEANRDVEPVVREMKGREAIRIA
DLYKSFHKCRHPEIKAVNGINLTIYEGQITAILGHNGAGKTTLFNILTGLTAPTSGTALI
FGYDVRDSNDMRAIRSMTGVCPQHDILFDLLTPREHLEFFAAVRGIPRSMIRNEVKKTLK
DIDLVEKADTFARYLSGGQKRKLSVGIAIIGDPKIIILDEPTAGVDPYSRRQLWSLLQSR
RHGKVILLTTHFMDEADILADRKAVISKGKLRCCGSSLFLKNKFGIGYHLTLVLEGNARE
HAISRLVMSHVSKAEKARRHGRELSFILPHNSVENFAPLFSAIEHEIKTRSSRLGISSYG
VSMTTLEEVFLHLEKDEETECTMDNLSKKMVRNRALSRSLSLQSKSTSYQSLQNEGITVQ
NDGQGKANDLPDGVHNDRNPPVLGLGLDPIKIRPNFLQTLYAMLRIRVLRLFRNIQLLYF
TIIMPLALIALGLYVNSIRTVDVKMESLKLNSHTYNETDILYVNNTDHDITKLIDNIAQD
VKNVEEYDGNFANLMSLAPHIAAFNINDYNYDVPRLSLTVTYNDTMQHSLPILLNILSNA
YYRLISGKDEATLIEVHTHPFQQTSQPQQFNVGAASCAILLGMVFILLPITLAVDMVYDR
EIKAKNQLRVNGLSFSMYFLSYFIVLLGLMSFICLGILGIIFLFDVPSLRGIPAIVTLGI
LIMLYCPSSILFSTCLSYIFDKLDSAQSMLPNIATFFGLLPFILVMILDMKGLGGTASFA
LHVAFSLLNSMYVPYAAVYYVDRVHLMCSINAACHYLAMSDYLTMEIIILAFGALLQCPV
WFFILLLLDINKSGGNVSDIFKRSFLRDGDSNREEIMENSDIGEHEDVDVKNERQKVFNF
VVSSGLNQEPPLVLLQNLRKEYQQKESGSSCCPKREDERNIAVRNLSLAVEPGEVLGLLG
HNGAGKTTTMKIIIAEEAPTKGKVQINGLNINTHMTEAFRQMGYCPQHDAQWKNITVREH
LECYAAIRGVPWSEVDRIVDLYLAGLQIHEHADKQSQECSGGTKRKLSFAMAMVGGPKVI
LMDEPSTGMDPRSKRFLWDTILASFQGGRGVILTTHSMEEADALCSRVGIMVKGELRCIG
STQHLKNLYGAGYTLEMKLLGGDCTPTTPSGDRIAGLKEFVAGLFSDATLEESFADRLVF
AVPQHAVTSLAECFTQLEKAKLELDIEEYSFSQTTLEQVFLKFSH
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggagcaatgacaatggatgtggttccaagcacactgtccgtgatgccgccgtt
gtgtcacgtggtaaggcaatgtcccagcagcgagaatcgattggcgtcattaacggaggc
agtgttcagcaacatagcgacgaaagcatcggtaacagcaacggcaccgccaccggcatc
tccgccaccagcaacgccagcaatcacagtcaaatagaggaaaatagggtgaatgcatca
cacaggatgaattcatgcgggctctacttctcccaactgcgggcgatgctcgtgaggaat
cttctactgaagaaacgagacacgcggaagacgtttatggaggtcgttctacccctgtac
atccttggtgctctgatcgtggtgaaagtcatgatacccaacccaaactttcccgcaata
tcaacgcagaggcacgaaggagatatattcaaattgttcaatggctacaaaaacaataca
atcgccgtggtacccaattctacggaaaccctcagcttcttaaactccatgaatagcctc
tggcgttctatgtgggattatcccgataagcttcccttaaacttcatggtgttcgacacg
aaggatgatctgcaggctgcgtactggagagatccttatagcgtacccctagcagttatc
ttcgaagaccctcagccgatatcacaacgtcttatatatgaaattcgaacgaatccttcg
tattccttgccaccatcaccaactgaattatattctgccccgatttgctgtcgaaaaaat
aaaactggtcactggatgggtgatcttttatcgataaaaaccggggaatcttgccccgtc
aacaattacttgcattccggcttcttggccctacaaatgataatggacattacaaagata
agattggatgtgggaaattccgacgtgacagtaccggatattaaactcataatgtttcct
aaggatccttataccgctgactggatgttagccttcagagttgttattccgctttacatg
gtcttggcgctctcgcaattcgtcacgtatcttctgatcttaatagtcggcgagaaggaa
aataagattaaagagggaatgaagatgatgggcttgaacgattctgtattttggttgtct
tggttcatcatctacagcatctttgtctttctactctccgccgttggagtggtgttgctc
tttacgctgcaaatgtttcaacatacgcatttcttaccgatatttcttttagttgtttta
tacagtttctccgtaattatgtttgccttcatgatcacgccatttttcgacaaatcgcgc
acggctggtgtcttgggaaactttgctatcacgatattaagcttgatgtactttattcaa
gtatttgtaagcgattccagttcaataacatattggtttgtttcgttgattagcccaacc
gctgtcgccttagcaatggacaaagctttagtattggatctgcaaggtgaaggagtgaac
tttgataatctctggtctggaccaggaatacctttcggaggcagtcttattatgatgact
ctagacatctttctgtatggctatctggcttattatctcgattctgtaataccaagtgaa
catggagtcaaaagaccaccttggttttgctttctacccggattttggtgtaaaaagaag
gtacaaagggtaccgtcatcgaacggcgagtcaaactctttcattcctggcgaagaggcg
aatcgcgatgtggagccggtagtgcgtgaaatgaagggccgcgaagcgatcaggatagcc
gatctctacaaatcgttccacaagtgcagacatcccgagatcaaggcggtgaatggtatt
aatttaacaatctatgagggtcaaatcaccgccattttgggtcacaacggtgccggtaaa
acaaccctcttcaacatcctcaccggcctgaccgcgcccacttccggcaccgcccttatc
tttggctatgacgtgcgagattccaatgacatgcgggcgatacgtagcatgaccggagtt
tgtccgcaacacgatattctctttgatctgctgacaccgcgcgagcatctcgagttcttt
gccgcggtgcgtggcataccacgctcaatgatacgaaatgaggtaaagaaaaccctgaaa
gacatcgatctagttgaaaaggcggataccttcgcgcgatatttaagtggtgggcaaaag
aggaaactatctgtgggaattgctattattggcgatcctaaaatcattattcttgacgaa
cccaccgctggagtagacccttactcaagaagacaattgtggtctcttctgcaatcaagg
agacatggaaaagtcattttattgactactcacttcatggacgaggcagacatactcgct
gacaggaaagcagtgatcagcaagggaaagcttaggtgttgcggcagctctttattttta
aagaacaagttcggcattggataccatttaacattagttctggaaggcaatgccagagaa
cacgctatcagccgattagtaatgtcacacgtaagcaaagccgaaaaggcgagacgccat
ggtcgggaattaagctttattctacctcacaactctgtggagaatttcgcgcctcttttc
tcggccatcgagcacgagatcaagactcgctcgagcagacttggcattagcagctatggt
gtatcaatgaccaccttggaagaagtatttttacatctcgaaaaagacgaggaaactgag
tgcacaatggataatctgtcgaagaagatggtgcgcaatcgtgcactcagtcgatcgctt
tcgttgcaatccaagagcacatcgtaccaaagcttgcagaatgagggcataaccgtacaa
aatgatggccaggggaaagcaaacgatttaccagacggcgtccataatgaccgaaaccca
cctgtgcttggtcttggcctagatcccatcaagattcggcctaacttccttcaaactctt
tatgctatgctacgcataagagtactcagactttttaggaacatccaactgttgtatttc
acgattattatgccgcttgctttgatagcgcttggtctctacgtaaacagcatccggacg
gttgatgtcaagatggagtcgctaaagcttaatagtcatacatacaacgaaaccgacatt
ctctatgtgaataataccgaccatgacattaccaaattgatagacaacatagctcaagat
gtgaagaacgtcgaagaatacgatggcaattttgcgaacttaatgagtttagcaccgcat
atagccgcgttcaacattaatgattataattatgatgtgccacgactcagtctaaccgtc
acatacaacgatacgatgcaacattcccttccgatattgctaaatattctttcaaacgct
tattatagattaatttcgggaaaggacgaagccacactgatcgaagtacacacgcaccct
tttcaacaaacgtcgcaaccccaacaatttaatgttggcgcggccagctgcgctatactt
ctcggcatggttttcatactattgccaatcactttagcagtggacatggtttacgatcgc
gaaatcaaagcgaagaatcagcttcgcgtgaatggcctgtcgttctccatgtactttctt
agctacttcattgtactactcggcctgatgagttttatttgcctgggcatactcggcatt
atattcctcttcgatgtgccttcgctacgaggaataccggccatcgttactcttggcatt
ctcatcatgctttactgcccatcatctatccttttctccacttgtctcagttacatcttt
gacaaattggactccgcgcaaagcatgttgccaaacatcgcgaccttctttgggttacta
ccgttcatattggtcatgatcctcgatatgaaaggactcggtggaacagcttcgttcgcg
ttgcacgtggccttttctctactgaacagcatgtacgtgccgtatgcagcagtgtactac
gtggaccgcgttcatttgatgtgctctatcaacgccgcttgtcactatctcgctatgtct
gattatctcaccatggagatcataatattggcttttggtgcgttgctgcaatgcccagtt
tggttcttcattttactcctgctggacatcaacaagagcggcggcaatgtcagcgatatt
tttaaacgttccttcctgcgtgatggcgactccaatcgcgaagaaattatggaaaactcc
gatatcggtgaacacgaagatgtggacgtaaaaaatgagcgacaaaaggttttcaatttt
gtcgtttcgtcaggtctcaatcaagagccaccgctagtattgcttcaaaatctgagaaag
gagtatcaacaaaaggaatctggatcatcctgctgcccgaaacgcgaagacgaacggaat
attgctgtgcgaaatctctcattggcggtggaacccggtgaggtgttaggcctactcggc
cacaacggtgccggcaaaactacaacgatgaaaattatcatcgcggaggaggcaccgacg
aaaggcaaggtgcagatcaacggtctcaacattaatacccacatgactgaggcttttcga
caaatgggctattgtccccaacacgacgctcaatggaaaaatatcactgtaagagagcat
ttggaatgctatgctgcgattcgtggggttccatggagtgaagtcgatagaatcgtggac
ctgtatttggccggtctgcagattcacgagcacgctgataagcaaagtcaagaatgttct
ggcggaactaaaagaaaacttagcttcgcaatggcaatggtcggtggacctaaagtcatt
cttatggacgaaccgagcacgggcatggatcctaggtcgaagagattcttatgggataca
attctcgctagttttcagggcggcaggggagttatattgactacccactcaatggaagaa
gctgatgcattgtgctcaagagtcggcataatggtaaaaggcgaactgagatgtatcggt
tcgactcagcatttaaaaaacctctacggtgctggatacaccttggagatgaaactgttg
ggtggcgattgcacaccgacaacaccttccggcgacagaatcgccggcttgaaagaattc
gtcgccggtcttttctccgacgccactctggaggaaagctttgctgatcggctagttttt
gccgtgccccagcacgcagtgacatcgctagctgagtgcttcacacaattagaaaaagct
aaactcgaactggacatagaagagtacagctttagtcaaactaccctggaacaagtattt
ctcaagttttcgcactag
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