Cardiocondyla obscurior: 139103055
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Entry
139103055 CDS
T10704
Symbol
Rs1
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27 isoform X1
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139103055 (Rs1)
03009 Ribosome biogenesis [BR:
cobs03009
]
139103055 (Rs1)
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139103055 (Rs1)
Spliceosome [BR:
cobs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139103055 (Rs1)
Ribosome biogenesis [BR:
cobs03009
]
Eukaryotic type
Pre-60S particles
Helicases
139103055 (Rs1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
139103055
NCBI-ProteinID:
XP_070513491
LinkDB
All DBs
Position
LG01:complement(6079864..6084037)
Genome browser
AA seq
747 aa
AA seq
DB search
MEESNWDLFKLEEGQEDENDPYDEETSSDEEDNYQPQKRKKQKCKDFNIDFEFTDEDHNR
DPFSDLNTLSDYIKRKPNTKLDDKIKKIRAERMQTGTENDLIKIEPETNQNDDNDSYSLS
EDELKKDTIKTKIKKGKVKNSIEKKDEEKENEKEEEIVNFEEYTDPQTCTSFLHMNLSRP
LMKAITSLNFVQPTHIQSATIPAALMGRDILGCAATGTGKTAAYMLPTLERLLFKPVGRA
TSRVLVLVPTRELGVQVYQVTKHLAQFIPHVEVGLSVGGLDVKVQESALRKNPDIVIATP
GRLIDHLRNAPTFSLDRIEILILDEADRMLDEYFAEQMEYIMKQCSRERQTMLFSATMTD
KVKDLAAVSLNNPVKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILVSLVCRVFGDHVI
IFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLENLRRFKDEEIDILLATDVAARGL
DISGIKTVINFTMPATLEHYIHRVGRTARAGRGGVSISLAGEQERLLVKKVIKQAKNPVK
NRIILPDIIEKYNKKLQSLESDVEKILQEEKSERELAKVENQANRIEKILKVENEEKRSW
FQSKKERKKEKDKFRLTEKQRKSKKQEKESSNIIKKKTKVQNEPKKDTAEDRAKKELEKL
VAYQARLAKKGNKLKKIRTIAEENHNSTKKRPLKKRKSVFTDDLTDTSKKSVKKMRYEAN
IKKRQNTFKTHQKSKFATKGKNKKKVF
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagcaattgggatttgtttaagctcgaggaaggtcaagaagatgaaaatgat
ccatacgatgaggagacttcttcagatgaggaagataactatcaaccacagaagcgcaag
aaacaaaagtgtaaggacttcaatattgactttgagtttactgatgaagatcataatcgg
gatcctttcagtgacttgaacacattgagtgattatattaaacgcaaaccaaacacaaaa
ttagacgataaaataaaaaaaattagggcagaacgtatgcagactggaacagagaatgat
cttattaaaattgaaccagaaacaaatcagaatgatgacaatgattcatattctttatct
gaagatgaacttaagaaagataccatcaaaaccaagataaagaaaggcaaagtgaagaat
tctatagaaaaaaaagatgaagaaaaagaaaatgaaaaagaggaagaaattgttaatttt
gaagaatacacagatccacagacatgtacatcattccttcacatgaacttatctagacct
ttaatgaaggctataacatcattaaattttgtacaaccaactcacatacaatctgctacc
attcctgcagctttaatgggtcgtgatattttgggttgtgcagcaacaggcacaggaaaa
actgcagcttatatgcttcctactttggaaagactacttttcaaaccggttggtcgtgct
acttcgcgtgttcttgtactggtgcccactagagagctgggagtgcaagtttatcaagtg
acaaaacacttagctcaatttataccacatgtagaggtcggtttgtcggttggtggatta
gatgtaaaagtacaggaaagtgcactgagaaaaaatccagatattgtaatagcaacgcct
ggaagattaattgatcacttaagaaatgctcccactttttccttagaccgtattgaaatt
ttaattttggacgaagcagatagaatgttagatgaatactttgctgaacaaatggaatat
attatgaaacaatgctcaagagaaagacaaactatgttgttctctgctactatgaccgac
aaagtcaaagatttagccgcagtatctcttaataatcctgttaaaatatttgtggatagt
aatcaagatgtagctttcaatttacgtcaagagtttatccgtatacgtaaagaaagagaa
ggagatcgtgaagcaatcttggtttcactagtttgccgagtttttggtgatcacgttata
atttttgtacaaacgaaaaagcaagctcacagattacatattttattaggattattgggt
ttaaaagttggtgaacttcatggtaatcttacacaaccacaacgattggaaaatcttcga
agatttaaagacgaagaaattgacatcttattagcgactgatgttgctgcaagaggttta
gatataagtggtataaagactgtgattaattttacaatgcctgctactctagaacattac
atacacagagtaggaagaactgcaagagcagggcgtggaggtgtttctatatcattagct
ggagaacaagaacgtcttttagtaaaaaaagttattaagcaagcaaaaaatccagttaaa
aatagaataattttacctgacataatagaaaagtataataagaaattacagtccttggaa
tcagatgtagaaaaaattctacaagaagaaaaaagtgaaagagaattagctaaagtagaa
aatcaagctaatcgcattgaaaaaatacttaaagttgaaaatgaggaaaagagaagttgg
ttccaatctaaaaaagaaaggaagaaagaaaaggataagtttcgattaactgagaaacaa
agaaaaagtaaaaagcaggaaaaagaatcttctaatataattaaaaaaaaaacaaaagta
caaaatgaacctaaaaaggatacagctgaagatagagctaaaaaagaattggaaaagtta
gttgcctatcaagcgcgattagctaaaaaaggaaacaaactgaaaaaaattagaacaatt
gcagaagaaaatcataattctactaaaaaaagaccattgaaaaaacgaaaatcagttttc
accgacgatttaacggatacgagtaaaaagagtgttaaaaaaatgcgatacgaagcaaac
attaagaaaagacagaatacatttaaaacacatcagaaaagtaaatttgcaacgaaagga
aagaataagaaaaaagtcttttag
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