Cardiocondyla obscurior: 139103797
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Entry
139103797 CDS
T10704
Symbol
Msh6
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139103797 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139103797 (Msh6)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139103797 (Msh6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
Motif
Other DBs
NCBI-GeneID:
139103797
NCBI-ProteinID:
XP_070514922
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Position
LG07:398967..405366
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AA seq
1123 aa
AA seq
DB search
MPKVNTILNYFSSPKTDKKPKETKEEREKSQTPKRKQKNSKEFAKDGKENKNIDKKRSHK
EDTEEEEEEDKPIQPKRRRLIIPDVESDNDSGDEFIPECESEESDSVSEGETEHESSTVT
EEETPEKKRKISPKFKSRKANQSFNTKTNQKNVKQPAQVQNQTASNGFTAIHTWPHLKFE
FLQPDRIKDINRKTPKDPDYDPKTLYVPVDFLNNQTPAMKQWWELKSKHFDCVFFYKIGK
FYELYHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARIEQTENPEM
MAARCSKMTRPTKFDKVVKREICQVSTKGTRVYTPLDVQASTPNSNYLLSLVEKYDPGST
ISSFGVCFIDTTIGEFYLGQFTDDRCNSRLLTLLAHHPPVHVIYERGNLSQKTLQLINST
LPAALKESLQRETQFWSATTVLKKLHEESYFKKENDSDFAWPKGLMPYLNKGDSLGLTPA
ENKELAVQALGGCIYLLKEFLVEQQLLAQGCFNTYNPPDFSNGQAGRNYANTMVIDAVTI
KNLRLFGEGSLINILDRCCTAFGKRLLREWICRPSCHKNVIMERQEAIQEIVDRMDITQS
ARAILSTLPDLERLLSKIHAQGNAARMKNHPDGRAIMFEGPTYSKRVIVDFTMTLLKFEE
VLKFVELFNDFKSKLINRYTQYEPDGDFPHLRETLDYFKTAFDHEEAKKQGYIIPKKGVD
AEYDLVLSELAKIKKDLDKYLEKQRQHFGVKVAFFGADKKRYQIEIPESQVKKIGSGYEL
QSQRKGFKRYYTVEARELLARQINAEEQKDKVLKDLNRRIFAKFSEKYDMWHNAVHKLAT
MDVLISLADYARNGDMCIPEICDRSDDKIFIQIKDGKHPCITSDNFIPNDTSLAADDAAS
FMILTGPNMGGKSTLMRQVGLIIIMAQIGSYVPASSCSITLVDRIFTRLGANDDILAGQS
TFLVELSETATILQHATPYSLVLLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFSTHY
HSLVEDYKTNKEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGV
PSTITKRAHEIANRMEQESNHKHIFNVLCKANGAGMKSLIAAI
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagtaaatacgatacttaattatttctcgtctccaaaaactgacaagaagcca
aaggagacgaaggaagagcgagaaaaatctcaaactcctaagaggaaacaaaagaacagc
aaagaatttgctaaagatggaaaagaaaataaaaatattgataagaaaagatcacataaa
gaggacactgaagaagaagaagaagaagataaacctatacaacctaaaagacgacgtctc
attattcctgatgtagaatctgataatgattctggagatgaatttattccagaatgtgaa
tctgaggaatctgattctgtttctgaaggggaaacagagcatgagtcttcaacagtgaca
gaggaagaaacaccagaaaaaaaaagaaagattagtcccaaattcaaatcaaggaaagca
aatcagtcttttaacacaaaaactaaccaaaaaaatgtgaagcaacctgcacaagttcag
aatcaaactgcaagcaatggatttactgctatacatacttggcctcatttaaagtttgaa
tttctgcaaccagatcgcataaaggatataaacagaaaaacaccaaaagatcccgattac
gatcctaaaacgctttacgttcccgttgattttttaaataatcaaactcctgcaatgaaa
cagtggtgggaattaaaaagtaaacattttgactgtgtattcttttacaaaatcggcaaa
ttttatgagttgtatcacatggacgcagttatcggcgtcaatgagcttagtctcacatac
atgcgaggtgaatttgcacattccggatttcctgaaattgggtacggtcgttattcggcc
agtctaatagagagaggatacaaagttgcacgaatagaacaaaccgagaatccggaaatg
atggcggcacgttgcagcaaaatgactagaccgacgaaattcgataaggttgtgaaacga
gaaatttgtcaagtcagtactaagggcaccagagtctatactccattagatgtgcaagcg
tctacaccaaattctaattatctattatctttggttgaaaaatacgatcccggttcaaca
attagttcctttggagtatgttttatagatacgacgataggtgaattttatctcggccaa
ttcaccgatgatcgttgtaattcaagattattgactctactggctcatcacccaccggtt
catgtaatatacgaacgtggtaatttatcgcaaaaaactctgcagcttataaacagcact
ttgccagcggcgctgaaggaatcactacaacgcgaaacacaattctggtctgctacaact
gtactgaaaaaacttcacgaggaaagttacttcaaaaaagaaaatgactctgactttgcg
tggcctaaaggtttaatgccgtacttaaataaaggagatagtttgggtttaacgccagca
gaaaataaagaattagcagtacaagcactaggaggatgtatctatttgctgaaggaattc
ttagtcgaacaacaattattagctcaaggctgctttaacacttacaacccgcccgatttt
tcgaacggtcaggcaggtcgcaattacgcaaacactatggtaatagatgctgtcacgata
aaaaatctaagactctttggagaaggttccctgattaatatcttagatcgttgttgtact
gcatttggtaaaagattattgcgcgaatggatctgtagaccatcttgtcacaaaaacgta
attatggaacgccaagaagctatacaagaaatagtagatagaatggatataactcagtcg
gctcgcgcaattttgtcaacgctaccagatcttgaaagacttttaagcaaaatacacgct
cagggaaatgctgctagaatgaaaaatcatcccgacggtagagccataatgtttgaagga
ccgacatattcgaagagagtcattgtagatttcacaatgacacttttaaaatttgaagaa
gtgttaaaattcgtcgaactgtttaatgatttcaaaagcaaattgataaatcgctatact
caatatgaaccagatggtgattttcctcatttaagagaaacattggattactttaagact
gcatttgatcacgaagaagctaagaagcagggctacattattccgaagaaaggtgtggat
gctgaatatgatttggttctatccgagcttgcgaaaatcaagaaagatttagataaatac
ttggaaaaacaaagacagcatttcggtgtaaaagtagcattttttggagcagataaaaaa
cgttatcaaattgaaattcccgagtcacaagtcaagaaaattggttctggatatgaatta
caatcgcaaagaaagggcttcaaacgctattataccgtcgaagcaagggaacttttggcg
agacagataaacgcggaggaacagaaggataaggtgctgaaagatcttaatagacgaatc
tttgcgaaattcagcgaaaaatatgatatgtggcataatgctgttcataaattagctacc
atggatgtacttatttctctggcggattatgcacgaaatggtgacatgtgtatcccggaa
atatgcgatagatcggatgacaagatatttatccaaataaaagatggaaagcatccttgt
atcacatctgataattttataccgaatgatacttcattagcagccgatgatgctgcttct
ttcatgattttaacgggaccgaatatgggaggtaaatcgaccctcatgcgccaagtgggt
ctgatcataattatggcgcaaataggcagttacgttccagccagttcatgttccataacg
ctggtggatcgtattttcacacgtttgggtgcgaatgacgatattttggctggtcagagt
acgtttttggtcgagctaagtgaaactgctacgatattgcaacatgctacgccctattcg
ctggttcttctcgacgaactgggacgcggcacatcaacctacgacggtacagcaatcgcg
gctgcggttgttgacgcgttgaccaagctaaagtgtcgcacgttattctcaacgcattac
cattctttagttgaggattacaaaaccaataaagaagttactttagctcatatggcatgt
atggtggaaacggaagaagaagaggaagtgtcgcaagagaccgtgacgtttttgtataaa
cttagcgaaggggcatgtccaaaatcctatggattcaatgctgctagattagcaggcgtc
ccgtctacaatcacaaagagagcgcacgaaatagccaaccggatggagcaagaatctaat
cacaagcacatctttaacgttctttgcaaagctaacggtgctggtatgaaaagtctcatc
gctgccatttaa
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