Cardiocondyla obscurior: 139103978
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Entry
139103978 CDS
T10704
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cobs01009
]
139103978 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139103978 (Hdac6)
04131 Membrane trafficking [BR:
cobs04131
]
139103978 (Hdac6)
03036 Chromosome and associated proteins [BR:
cobs03036
]
139103978 (Hdac6)
Enzymes [BR:
cobs01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
139103978 (Hdac6)
Protein phosphatases and associated proteins [BR:
cobs01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139103978 (Hdac6)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
139103978 (Hdac6)
Membrane trafficking [BR:
cobs04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139103978 (Hdac6)
Chromosome and associated proteins [BR:
cobs03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
139103978 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Rotamase_2
Calpain_III
Motif
Other DBs
NCBI-GeneID:
139103978
NCBI-ProteinID:
XP_070515278
LinkDB
All DBs
Position
LG07:complement(1026746..1033041)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSESIENLDLLTAAKQLADREIELIKVIENSSKCQRITTNMFTNAKKKKSGKSKNARPSA
ALLAAKQEAAKRQSMSDKKSNNTFVPDIYHKAINAYKLTRKETGLVFDRSMAEHKCIWDP
NYPECPARFTRVMQRCEELGLVQKCKFIEPRLATENEILSKHSREQIDILKATDGSTDDE
NLESISSKYDCVYIHPSTYRLSLLAVGSTINLVESICKGEIQNGMAIIRPPGHHAMKSEY
CGYCFFNNVAIAAEKALISGLANKILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEYGE
FWPNLRESDFHYVGEDLGEGYNFNIPLNKTGMTNADYIAIFQQVLLPMAYEFQPDLIIIS
AGYDAALGCPEGEMLITPACYAHLLSSLLSLAGGKVAVILEGGYCLKSLAESAALTLRTL
LGDPCPILQTLDLPSLSIRNTILNAIYVHKPYWKCYQYQDTYNTNSVTHNKEEIANRHVV
TTTYRGSEVKLDKYETRNCYPVQSKETLETIEKKLNELIQLTNLHIAPQKVCIVYDDKMQ
KHCNISDNSHPEKPSRISSIYKNHEEYDLLRRCYLLQGRNATIEELSLIHSKDYIEEIKQ
TSILKLKELQKQASDYNSVYLHTETWSSACMSTGSLLQVVDAVLNGECQSGVAIVRPPGH
HAERDMACGFCIFNNVAVAAMYAVQFHHVKRVLIIDWDVHHGNGTQSIFEENPQILYISV
HRYDNGSFFPNSKQANYTNAGLNAGEGFNVNIPWNKKGMGDAEYIAAFQQIVMPIAYQFN
PELILISAGFDACIGDTLGGCLVSPELYGHLTHWLSSLANGRIILSLEGGYNINSISHAM
TMCTKALLGDPLPMLDPNLIPCTSAINSINNVLKTHKKFWPNLQYGMSLPKEKSNFSKMK
TMFNELEKQEGNADKSKQTESKIALEKIESEKLELNLAIDKNCFNLVTDEEISKLTCEVE
NIKIKNSHAIKSETIETKNLDVLQSIQKCVNEMNQPKGSQQENSNTGDDRDDNAAAGSSQ
RETRLKTLTEYFSDNLQALTAGEMFAVVPLQDCPHLFTVNEVPPSGIDVTLPCAECASTA
ENWICLQCYTVHCARSVNQHAMQHAEEYEHPMTLSFSDISVWCYGCEAYIDNPRLYAARN
AAHQSKFNEKLPWTYSKNST
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaatccatagagaacctagatttacttactgctgctaaacaattagcagacagg
gagattgagctgataaaagtgattgagaattctagcaagtgtcaaaggataactacaaac
atgttcacaaatgctaagaaaaaaaaatctggaaagtcaaaaaatgctcgtccgtcagct
gcgttactggctgcaaaacaagaagcagcaaaacgacaatcgatgtcggataagaaatct
aataacacctttgtaccagatatatatcacaaagcaatcaatgcatataaattaacacga
aaggaaactggtctcgtgttcgatcgaagcatggccgagcacaagtgcatctgggatcca
aattatcccgaatgcccagcgagatttacacgagttatgcagagatgtgaagagctgggc
ttggtgcaaaaatgtaaatttatcgaaccaagactcgctactgagaacgaaattttaagt
aagcacagtcgcgagcaaattgatattttaaaggcaacggacggctctacggacgatgaa
aatttggaatcgatatcgtctaaatatgactgtgtctatatccatccgtctacgtataga
ttgtctttattagccgtgggctcaacgatcaatttggtagaaagtatttgtaaaggcgag
atacaaaatggcatggctattatcagaccgccgggccatcacgcaatgaaatcggaatat
tgtggttattgctttttcaacaatgtagctatagcagcagagaaagcattgatttcgggt
ttagcgaataaaattttaattgttgattgggacgttcatcatgggcaagcgacgcaacaa
atgttttacaatgatccacgagtagtctacttttcgatacatcgttatgaatatggtgaa
ttctggcctaatttaagagaatctgattttcattacgtcggagaagatcttggagaaggt
tataattttaatattcctttaaataaaaccggtatgacgaatgccgattacatcgcaatc
ttccagcaagttttattgccaatggcttatgaatttcaaccggatttgataataatatca
gcgggttatgatgcggctctgggttgtccagagggtgagatgctaattactccagcatgt
tatgcacatttactgtcgtcgttattaagtttggcaggtggaaaagtagctgtaatttta
gaggggggctattgtttaaaatcattagcggaaagtgcagcactgactttaagaacttta
ttaggcgatccatgcccgattttacaaacacttgatttaccatcattaagcatacgtaat
actatcctgaatgcaatttacgtacataagccgtactggaagtgttatcaatatcaagac
acatacaatactaatagtgtaacacataataaagaagagattgcaaatcgacatgtagtt
acgaccacgtacagaggtagtgaagttaaattggacaagtatgaaactcgaaactgttat
cctgtacaaagcaaagaaacattagaaaccatagagaaaaaattaaatgaattaatacaa
ctaacaaatctacatatagcacctcagaaagtatgtatcgtctacgatgacaaaatgcag
aaacattgtaacatttctgacaattctcatccagaaaaaccaagtcgcatctctagcatt
tataaaaatcatgaagaatatgacttattacggcgatgttatttattacaaggaaggaat
gcaacgatagaagaattgtcccttatccattcgaaggactacatagaggaaattaaacag
acatcgattttaaaactaaaagaattacaaaagcaagcctcagattacaattctgtttac
cttcataccgaaacgtggtctagcgcctgtatgtccaccggttcccttttacaagtggtg
gacgcggttttaaacggagagtgccaatccggagtggccattgtaaggccacctggacat
cacgccgaaagggacatggcatgtggtttttgcatatttaataatgttgccgtggctgcg
atgtatgctgtacagtttcaccatgttaaaagggtattaataatagattgggatgtacac
catggaaacggcactcaatctatctttgaagaaaatccacaaatcctgtatatatctgtt
catcgttacgataatgggagcttctttccaaattccaagcaagctaattatacgaatgct
ggattaaatgcaggcgagggatttaacgtgaacataccgtggaacaaaaagggaatggga
gatgctgaatacatagcggcttttcagcaaattgtgatgcccatcgcgtatcagttcaat
ccagaattaattctgatttcagccggattcgatgcttgtattggtgacacgcttggaggt
tgtcttgtaagcccagaactctacggtcatttgactcattggctttcatctttggccaac
ggtcgtataattttaagtcttgaaggaggttacaatatcaactcaatttcccatgcaatg
acgatgtgtaccaaagccctcttaggcgatcctctgccgatgctagatcccaatcttatt
ccctgtactagtgcaatcaattctattaacaatgtactgaagactcataagaaattttgg
cccaatctgcaatatggaatgtccttaccgaaagaaaaatctaatttttctaaaatgaag
acaatgtttaatgaactagagaaacaagaaggaaatgcagataaatcgaaacaaaccgaa
tcgaagattgccttagaaaaaatcgaaagcgagaaactggaactgaatttagcaattgat
aagaactgttttaatctagtgacggatgaagagatttcaaaattaacatgcgaagtggag
aatattaagattaaaaattcgcacgcaataaaaagtgaaacgattgagacgaaaaatctg
gatgttttgcaaagcatacaaaaatgcgtgaacgaaatgaatcaaccaaaaggcagccag
caagaaaattctaacacaggcgatgatcgcgatgataacgctgcagcaggatcttcacag
agagaaacacgactcaaaactctcacagagtatttttctgacaatcttcaggctttgacg
gcaggagagatgttcgcggttgtgcctttgcaagattgtccacatctgtttacggtcaac
gaggtccctccaagtggcatagatgtaactttaccatgtgccgaatgtgctagcacagca
gaaaattggatttgcttacaatgttacactgtacattgcgcccgcagtgttaatcagcac
gcaatgcaacacgcagaggaatacgagcatcctatgacgctcagctttagcgatatttcg
gtctggtgctacggttgcgaggcatacatcgataatcctcgattatatgcggcaagaaac
gcggctcatcaaagtaaattcaatgaaaagcttccttggacttatagtaaaaatagcaca
taa
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