Cardiocondyla obscurior: 139104686
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Entry
139104686 CDS
T10704
Symbol
Clp
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139104686 (Clp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobs03021
]
139104686 (Clp)
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139104686 (Clp)
Transcription machinery [BR:
cobs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139104686 (Clp)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139104686 (Clp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
Nab2-like_zf-CCCH_
zf-CCCH_DUS3L
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
139104686
NCBI-ProteinID:
XP_070516423
LinkDB
All DBs
Position
LG08:complement(4542675..4544376)
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AA seq
287 aa
AA seq
DB search
MECIVANVEHMRFDIEIALDEQYGALPLPFTGMDKSIAAVCQFYPKGTCSKGASCPFRHV
RGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPETK
VRDCPWYDRGFCRHGPLCRHRHVRRVLCMAYLAGFCPEGSNCKFMHPRFELPAVQDMQPK
EGKKVMITCHFCGEGGHKAIYCNKMPSDVREAQVRQELDNNSHTSHHHMNMHNGPPPPRG
PQKPLEEVTCYKCGQKGHYANKCPKGHLAFLSHAGSGGSTQNQNYRR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtatagtagcgaatgtcgagcacatgcgttttgatattgaaattgctctcgat
gagcaatatggggctcttccattacctttcactggcatggacaaatcaattgctgctgta
tgtcagttttatccaaaaggtacttgcagcaaaggagcttcgtgcccgttcagacatgtg
cgtggtgaccgcactatagtatgcaaacattggttgagaggtctttgtaaaaaaggcgat
cagtgtgaatttttgcacgaatatgacatgacaaagatgccagagtgttatttctattcc
agattcaatgcttgccacaataaggaatgtccatttctacatatcgatcccgaaacaaaa
gtaagggattgtccgtggtacgatcgtggcttctgtaggcatggtcctttgtgtcgacat
cggcacgtcagacgtgttttatgcatggcttatttagctggtttttgtccagagggatca
aattgcaagtttatgcatccaagattcgagttgccagcggtacaggacatgcagccaaag
gagggtaaaaaagtgatgattacttgtcacttttgtggagaaggaggtcataaggcaata
tattgtaacaaaatgccgtcggatgtacgggaagcccaagtaagacaagagctcgataac
aattctcacacgtcgcatcatcatatgaatatgcacaatgggccaccgccgccacgagga
ccgcaaaaaccactcgaagaagtaacgtgttacaaatgtggtcaaaaaggccattacgct
aacaaatgtccgaaaggtcatttagcgtttttgagtcacgcaggcagtggtggcagtaca
caaaatcagaattatcgaagatga
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