Cardiocondyla obscurior: 139104995
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Entry
139104995 CDS
T10704
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03020
RNA polymerase
cobs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139104995
09124 Replication and repair
03420 Nucleotide excision repair
139104995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobs03021
]
139104995
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139104995
Enzymes [BR:
cobs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139104995
Transcription machinery [BR:
cobs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139104995
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139104995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
139104995
NCBI-ProteinID:
XP_070516914
LinkDB
All DBs
Position
LG08:6077776..6085253
Genome browser
AA seq
1906 aa
AA seq
DB search
MTMSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK
IKEIVVKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENIESQPQMDRKPGHGGCGRY
QPNLRRSGLDVTAEWKHVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPDW
MIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISENI
KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERI
DLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRK
MTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHS
THPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR
FYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLP
TIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRTVLR
TIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKCIIVAGDD
RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTKI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDN
KFQDTDEDSVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDSEKSKSGIEIPMAVGAGMMGTAGMFFGSVT
GISSMSPQMTPWMGATPGYGASSMSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPAS
PTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKY
SPTSPTYTPTSPNYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgtccgactctaaggcgcctttgaggacggtgaaacgcgttcaatttggtatt
ctctcgccagacgagattcgtcgtatgtctgtcactgatggcggcatacgatttcccgaa
actatggaaggtggccgtcctaaattgggcggcctcatggatccaaggcaaggtgttatt
gataggaattccagatgtcaaacttgtgctggaaatatgacagaatgccctggtcatttc
ggtcatatagatctagcaaaaccagtatttcacgtaggatttattacaaaaactataaaa
atattgagatgtgtctgcttttattgttcaaaattacttgtcaatcctcataatccaaag
attaaagaaattgtcgtaaaaacaaagggacaaccacgaaagcgacttgcattcgtttat
gatctttgtaaaagcaaaaacatttgcgaaggtggagatgaaatggatattaataaagaa
aatatagagagtcaaccacaaatggatagaaaacctggtcatggtggttgtggtagatat
caacctaatcttagacgatcaggcttggatgtcacagctgagtggaagcatgtgaacgaa
gactcgcaagagaagaaaataattctttcggccgagagagcttgggaaattttaaagcat
attaaggacgaggaatctttcattttgggtatggacccaaaatttgctcggccagattgg
atgatagttaccgtgctgccagtgccaccactgtcagtcagacctgcggttattatgtat
ggttctgccaagaatcaagatgatttgacgcacaaattggcggacattattaaatctaac
aacgagttactacgaaacgaacagtctggcgcagcggcacatgtaatctcagaaaatata
aagatgttacaatttcacgtggcaacactcgtcgataacgatatgcccggtatgcctaga
gcgatgcaaaagtcaggtaaaccgctcaaagcgatcaaggcccgattgaagggaaaggaa
ggcagaattcgcggaaacttgatgggaaagcgcgtggatttttctgcccgtactgttatt
actccggatcctaatctacgtattgatcaagtaggcgtgccgcgtagtatagctcaaaat
ttgacatttcctgaaattgtaaccccctttaatattgacaaaatgcaagtgctagtcagg
cgtggtaattcacaatatcctggcgcaaaatacatagttcgtgataatggcgaaagaatt
gatttacgcttccatcccaagtcttcagatctgcatttgcagtgcggctaccgtgtagaa
aggcatatccgcgacggcgatcttgtgatctttaatcgccaacccactcttcataaaatg
agtatgatgggtcatcgcgttaaagtacttccatggagcacatttcgtatgaatttaagc
tgcacatcgccttacaatgctgattttgacggcgatgaaatgaatttgcacgtgccgcaa
tcgatggaaactcgcgcagaggtcgaaaatattcatgtgactccacgacaaattattact
ccacaggcgaacaagccagttatgggtattgtacaggacactctgactgctgtgagaaaa
atgactaagcgcgacgtatttatcgagaaggaacaaatgatgaatctattaatgtttcta
cccagctgggacggcaaaatgccacaaccatgtattctgaaaccgaaaccgttgtggacc
ggcaaacagttattttctcttatcataccgggcaacgtaaatatgatacggacacatagc
acgcatcctgacgaggaagacgacggtccatataagtggatttcaccgggtgacactaaa
gtcatggtagaacatggagaactcgtaatgggtattctctgcaagaaaaccttaggtact
tcagctggttctttgcttcacatctgtatgcttgaactgggccacgaagtatgtggacgt
ttttacggcaatattcaaactgtcattaataattggctactactggaaggccattcgatc
ggtattggtgacactattgccgatccacagacatatttggaaatccagaaggcgattaaa
aaggctaaagaggacgtgatagaggtaattcaaaaggctcacaatatggaactcgaacct
acgcctggcaacacgcttcgtcaaactttcgagaatcaagtgaacagaatattgaacgat
gccagagataaaaccggaggctccgccaaaaagtcattgacagaatataataatttgaaa
gctatggtagtatcgggctcaaaaggctccaacattaacatttctcaggtcattgcttgc
gtagggcaacaaaacgtagaaggtaaacgaatacccttcggtttccgtaagagaacgcta
ccgcatttcatcaaagacgactatggaccggagtcccgtggatttgttgaaaattcatat
ttagctggtcttacgccgtcagaattctatttccacgcaatgggtggtcgtgaaggtctc
atcgatactgctgtaaagacggccgaaaccgggtatattcagcgtcgtttgataaaggct
atggaatcagtcatggtgcattatgatggcaccgtacgtaattccgtcggtcaattaatt
cagttgcgttacggagaagacggtctttgcggagagactgtcgagtttcagaatttacca
acgattaaagtgagtaacaaggcctttgagaagaaattcaaatttgatccgactaatgag
cgatacttgcgacgtatatttaatgaagacattgtgcgagagatgatgggatctggagaa
gtaatatccgaactggaaagagagtgggaacaattaaatagagatcgcactgtactccga
acaattttcccgagtggtgaatctaaggtcgtgctaccctgtaatctacaaagaatgatt
tggaatgtgcaaaaaatattccacattaataagcgagcgccaactgatctcagtcctatg
agggtaattcaaggcgtgaaaaatcttttggaaaaatgcattatcgtcgctggagacgat
agattgagcaaacaggcgaacgaaaatgcgacattattatttcaatgtttagtaagatcg
actttatgtaccaaatgcgtctctgaggaatttagattatcaagtgaagcttttgaatgg
ttgattggagaaatcgagacgagatttcagcaggctcaagtatcacctggcgagatggtc
ggcgcattggcggcacaatctcttggcgaacctgccactcagatgaccctgaacacattc
catttcgctggtgtatcgtcgaagaatgtaacccttggtgtacccagattgaaggaaatt
attaatatcagtaaaaaaccaaaggcgccgtcgctcacggtgttcttaacaggcgccgct
gcgcgtgacgctgaaaaagcgaagaatgtgctctgtcgactggagcacacaacgttgaaa
aaagtaacagcaaacacggctatatactacgatccagatccacagaataccgtaatctcg
gaagatcaagaattcgttaatgtttattacgagatgcctgactttgatcctacgaaaata
tcgccgtggcttttgcgaattgagctggacagaaaacgaatgactgacaaaaagctgacg
atggaacagattgctgaaaaaatcaacgccggctttggtgacgatctaaactgtatattc
aatgacgataatgccgagaaattagtcctacgtattagaataatgaatagtgatgataac
aagtttcaagacacggatgaagattctgtagataagatggaagacgatatgttccttcga
tgtatcgaagccaacatgcttagcgatatgactttacagggtattgaagctatcggcaaa
gtttatatgcatttaccgcaaacagattctaaaaaacgtattattatcacggaaaccggt
gaatttaaggccatcgcagaatggcttttggaaactgacgggacgagcttgatgaaggtg
ttgagcgaaagagacgtggatcccatacgcacatttagcaatgatatttgtgagatattc
caagtgctcggcatcgaagccgtgcgaaaatccgtagagaaggagatgaacgcagtattg
cagttctatggcctttacgtaaattatcgacatctcgctttactttgtgatgtcatgaca
gcgaaaggccatcttatggcaataacacggcacggaattaataggcaagatactggcgct
ttgatgaggtgttctttcgaagaaacggttgatgtattactggatgctgcatctcacgca
gaggtagatccaatgagaggagtatctgagaatattataatgggacaacttcctcgaatt
ggaacaggatgttttgatttgttactggattctgagaaatctaaatctggaatcgagatt
cctatggcggttggcgcaggtatgatgggaacggcaggaatgttcttcggcagcgtaact
ggcatatctagcatgagtcctcaaatgactccttggatgggagctactcctggttacggc
gcatcgagtatgtcgccagcattgagtagtggtatgacgccgggtggcgcatgcttttca
ccgtcaggagcatcagatgcgtcaggtttatcaccagcatattcggcttattcgccgcaa
ccgggaagtcctggcagcccaggtccaagtatgagtccgtttcctatgtcaccagctggt
gcagcatcacctagttactctccaacatctccggcgtatttacctacgtcgcccagcatg
acaccttcaagtccaaattattcgcctacaagtccgacatattctccaactagtccgaat
tattcgccaacatcaccaagttattcaccgacgagtccaagctattcacctacttcgccg
agttattcgccgacgagtccgagttattcgcctacttcgccgagttattcgccgacgagt
ccgagttattcgcctacttcaccgagttattcaccaactagcccaagttattcgcctaca
tcgccaagttactcgccaacttcaccgagttattcaccaacgagtccaagctattcgcct
acttcgccgagttattcgccgacgagtccgagttattcgcctacttcgccgagttattcg
ccgacgagtccgagttattcgcctacttcacctagttattcaccgagctcgcctaattat
acacctgcttcaccttcatattcaccaacttcgcccagttattcgccaagctcgccgcag
tactcgcccgcgagtccaagttattcccccagcagtcctaaatattcaccgacaagtccg
agctactctcctacctcgccatcatttgctggtacatcgccgcaatacacgcctgcgagt
cccacatactctccgacgagtccaacatattcgcctacaagtccatcgtactcaccgagt
tcgccacagcatactgcttctggcagcactcgatattcacctagcagcccgaattattcg
cctaccagtccaacatactctcctacaagtccacagtactcgccgtcgagcactaaatat
tcaccaacgagtcctacgtacacgcctacaagtccaaattattctccgacaagtccgaca
tattcgccacctgtaccgggatattcacccacaagccccacgtattcgccagcatcaccc
gcttatgagacagatgattaa
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