Cardiocondyla obscurior: 139105079
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Entry
139105079 CDS
T10704
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139105079 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139105079 (Not1)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139105079 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139105079 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
139105079
NCBI-ProteinID:
XP_070517070
LinkDB
All DBs
Position
LG08:complement(3095069..3107118)
Genome browser
AA seq
2401 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDSCREISGLVQWHGLEADRHLLRDLISSVDFSKG
ELLDSSAKDYFQAKLLKQECNSLLSKPAFISTLCFAIDNPLHHQKSLNPSPKFFINLKKT
LGLTLVQEVAFAIALQHSENAEIRVLALEHTQKQLLELIKNYINSETSNKHHEGGLHDSL
PQVLHLVLSQAFHTANLYNLPAETKEKFLKHLRRDFPRELVPVVLAPFLYPEDEETLQFK
IELNMAVTQMDSNTLVELIMELGYSFTSSIEECRSALMGAREISPACVARVLSQMARTCS
NLDDTGSLQTFWSNSTTSQDSNKEKPSDSIIPTTWNVEVFVLTVKEIQSTLSWNEVILKL
DHPEFLIKDRQGLNLLITGLKLGLQQPPGYISEFPVELFYRFWENIEGQFSLIQQILKCP
DIFCFADHHYHTVIVDVLKAAPESDSKEAQTWRSINMIELLLHMAERGLYNPVQELFKWP
IQHCPDVLILALLQINPPFTLLRQEMFTTLLPIFLGNHPNSAVILHHAWHANNPKIKTLI
MHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKLEK
WLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDTIVPKASQLPQETLTTILACLQVC
AGNVSQELSDLIMTMVQNCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSKQV
DPLGNISTSLASMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLIGPSPSPFPILPLS
SQLHSGPVGAQGPSVLPGGTIGGLGRLGPPAGIEKARMPETSNLFPDMGQNVSKEVEDEA
NSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYPEK
ELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKSEGSKMYYFGITALDRFKSRLKE
YQTYCEHVRTIPHFAEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKTMTT
TTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDKTA
FIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKLPE
VNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNRPILQIDIDLKSL
LVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLNLK
FEIEVLCKNLSIDVAELKPVIYLKDPEKLRNLEYQLSHPNKKTETTNNQQQTQGPIEELV
GPTTSSTINPQTAPPVNTTPSLPAGPPEPRFNYMDISVTGIANISQHITVNNQLPLFQTH
PHLKQYIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHMVR
NLTAGMAMITCRDQILASISTNLKQAFLPALISPTQQQKELVEQAANVVAADNMELACAF
VQKTAIEKAIPEMDKRLLNEFELRKIARQEGRRYCDPLAKYQAERMPEQIRLKMGSVTPQ
QMAVYEEFARNIPGFLPLSERDTQALFIPKPISEAPLTAFTPNSAVAVATAQQVAAYATV
TVSNDEVGAMLEKLATEVEVLLAAMLPAAPPPQHAILHSLLESIVLTRRSRDANAAMTLL
KKAVEGLLDGPMFNTGVIDSDNLIQRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLIEC
REDYRYNFEAVDYLIRSHLISLPQYDVAIAQAIESGNGLATVFAMQLVQLYLIDERQATH
VTETDLFHTIEILARMLHHRSPPEGISLYRLTNLVESLRANHDSGVLVDRAPAGPTAHIH
SGILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGDATN
THTKINLLNKVLGIVAGVLLQDHEIRGADFQQLPYHRIFIMLFLELCAPEPVLEAVNFQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLQEIALAPRVLTNFASTIQPLTFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIQFIRSKGHAPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPATETEIP
E
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacagatcagttatttggttgcaaatttg
agtaagaaaaatttcgaggacagctgccgggaaatatcgggtttggtgcagtggcatggt
ctagaggcagatcgtcatttgttgcgcgatctaatctcgagtgttgacttttccaagggt
gagctgttagactcgagcgcgaaagattattttcaagcaaagttactgaaacaggagtgc
aatagcttattgagcaaacctgcttttatatctactttgtgctttgctatagataatcct
ttacatcatcaaaagtcattgaatccttctccaaagttttttatcaatttgaaaaaaaca
cttggcttgactttggtacaggaagttgcgtttgcaattgcgttacagcattcggaaaac
gctgaaattcgtgttttagccttagagcacactcagaagcaactgcttgagttgataaag
aattacataaattctgaaacaagtaataaacatcacgaaggtggtttgcacgactcattg
cctcaggttcttcatctagtactcagccaggcttttcatactgccaatctatacaaccta
cctgcagaaacgaaagaaaaatttcttaaacacttgcggcgtgactttcctcgtgaactg
gtacctgtagtgttagcaccatttctgtatccggaagacgaggaaactttacaattcaaa
atcgagctaaacatggctgtcactcaaatggatagcaacactttagtagagttaattatg
gaattaggatatagctttactagtagtatagaagaatgtcgatcggcattaatgggtgcc
agggagatatctccagcgtgtgtagcgcgtgtgctatcacaaatggcacgtacatgcagc
aatctcgacgatacgggaagtctgcaaacattttggagtaactctaccacttcgcaagat
tctaataaagaaaaaccgtcagacagtatcattcccacaacatggaacgttgaagtattt
gttttaacagtgaaagagatacaatctacattgtcttggaacgaagtcatcttaaagtta
gatcatccagagtttctaatcaaagatagacaaggcttaaatttattaattacgggtctt
aaattaggtctacagcaaccaccgggatacatatccgaatttcccgttgagttattctat
cggttttgggaaaatatagaaggccagttttctttgattcagcaaattctcaagtgtcca
gatattttttgtttcgctgatcatcactatcatacagtgatagtagatgtactgaaagcg
gctcctgagagtgatagcaaagaagcgcaaacatggcgatcaatcaacatgatagagttg
cttttacacatggctgaaagaggattatacaaccctgtgcaggagctctttaaatggccg
attcaacattgcccagacgtgcttattttggcattgctgcaaataaatccaccttttaca
ttattgagacaagaaatgtttactacgctactaccgatctttctcggcaatcatccgaat
tctgctgtgatactgcatcatgcatggcatgctaataatcctaaaataaagacacttata
atgcatgccatggcagattggtacacgcgaggtgatcacgatcagacaagattatcacga
atattggatgtggcgcaagatttgaaagcgctgtctgctttacttaattcacaatcgttt
ccattcgtcattgaccttgcctgtttagcttcccgacgagagtatttgaagttggaaaag
tggttaacagacaagatcagggatcacggagaagtttttgttgccgcatgtgttaaattt
ttacaacggcgatgtcctcaagttatgggtcctggtatcaaagaagatactattgttcca
aaagccagtcagctaccacaagaaacactcaccacaattttagcttgtttacaagtttgt
gccggaaatgtctctcaagaactctcggatttaataatgacaatggtgcagaattgcagc
ctaatgttgagtaagagtactatgaatagaccaccaccaccaggagttttgagacatcga
ggtttagagccctttaatccagcaactttgggaagccaactgttttcttcaaaacaagtg
gatcctcttggcaatattagtacaagtcttgcttctatgggcctcggtactggtcttggt
cctccaagtagctccgcgtttaatctgcctggcgcactaggtcccctggtttcggcaccc
ggatctccttctcgacttataggcccttctccaagtccatttcctatattaccattgtct
tcgcaattacattcgggtccggttggcgctcaaggaccgtctgtacttcccggtggtacg
ataggtggattggggcgccttggaccaccagctggtatcgaaaaagcaagaatgccggaa
acttccaatttatttcctgatatgggacaaaatgtctccaaagaggtcgaggacgaagct
aatagttattttcaacgtatatacaatcatccacctcatccaactttatcaattgacgaa
gtacttgatatgttgaaaaagtttcaagactctggtatcagaagagaaagagaagtgttt
aattgcatgttacgaaatctatttgaagaatatagattttttccgcagtatccagaaaag
gagttgcaaataactgcacaattgtttggcggaatcattgaaaggggtctcgtcaatagt
tacatgacacttggattagctcttagatttgttcttgatgctctaaaaaaatcagaaggc
agcaaaatgtattacttcggaatcacagctttggatcggtttaaaagtcgtttgaaagaa
tatcaaacctattgcgagcacgttagaacgattccgcatttcgctgaattcccacctcat
ttagtcgaatatatagaatatggattacaaggacaagaaccaccatcgagaccacaaggt
ccaaaaactttagcggcaatgctcgctccagttacaaccccgtacaaaactatgactaca
actactatcacaactagcactacgcaagcaaaaccatctacaaccccgacgacgtctctc
tcggctagaccttctatgccttcagttgccaatgcgactaatattgatacgttgcttgtt
gcaacagacaaagaggaaaaaattacgacacctcctgaagctttgcaagacaaaactgcc
tttattttcaataatcttagtcagttaaatctgcaacaaaaatgtgatgagatccgtgaa
attgttacggaagaatattggccatggatggcgcagtatttagtgatgaagcgtgccagc
atagaattaaattttcatgcgttatactcgaactttttggattgcataaaattacctgaa
gtgaataaaatggtcacgagagaaacgtttcgaaatattaaagttcttttacgaagtgac
aaaggaatagctaacttttctgaccgatcattgttgaagaatttaggacattggctcgga
atgttaacgcttggcagaaatagacctattttacagatagatatagatctaaaaagctta
ctcgttgaagcgtatcacaaagggcagcaagaacttctttacgtagtgccatttgttgca
aaagtgcttgaaagctgtgcgaaaagtcgtgttttccgaccacctaatccatggaccatg
gcgattatgaacgttttagccgagctccatcaggaacctgacttaaaattgaatttaaag
tttgaaatcgaagtactttgcaagaatctaagcatcgacgttgcagagctaaaaccagtc
atttacttgaaagatcctgaaaaattgcgtaatctagaatatcaactgtcacatccgaat
aaaaaaacagaaacgactaataatcaacaacaaactcaaggacctatagaagagttagtt
gggccgacgacgagtagcaccattaatcctcaaactgccccacctgtaaatacgacacct
tcattgccagccggcccacctgagccgcgatttaattacatggatatatctgtaaccggc
attgctaatatatctcaacatattactgttaacaatcagttacctctgtttcaaacgcat
cctcatttgaaacaatacattcgcccggcggttgagagagcaattcaagaatggattcac
cctgtcgtggataggtctattaaaattgctcttacaaccagcgagcaaattgtgaggaaa
gactttgccttagatccagaagaagtacgaatgcgtacagctgctcgtcacatggtgcgc
aatttaactgccggtatggctatgattacatgtcgtgatcagattctagcatcgattagc
acgaatttgaaacaagcttttctgccagcgttgatcagtccgactcaacagcagaaagaa
cttgtcgaacaagcggcaaatgtagtcgcggctgacaacatggaactcgcgtgtgcattt
gtacaaaaaaccgctattgagaaagcaatacctgaaatggacaaacgactgttgaatgaa
tttgaattgcgaaaaattgcccgacaagaaggaagaagatactgtgatccccttgctaaa
tatcaagccgagaggatgccggagcagattaggttgaaaatgggtagcgtaacgcctcaa
cagatggccgtatacgaggagtttgcaagaaatattccagggtttcttccactctccgaa
cgggatacgcaagcgctatttattccgaaacctatttctgaagctcctcttactgctttt
acacccaattctgcggtggcagttgctacggcgcagcaagtagcagcttacgcaaccgta
acggtcagcaatgacgaagtgggtgctatgttggaaaaacttgcaacagaagttgaagtc
ttgttggctgctatgttacctgccgcgccaccaccgcaacacgctattcttcacagtctt
ctggaatcgatcgtacttacaagaagatcaagagatgctaatgccgctatgacattgtta
aaaaaagccgttgaaggtttactagatggacccatgttcaacaccggcgttatcgattcc
gataatctaatacaacggtacagagaattgcatctacgtatattgaaatgtcttcaagat
ccgcgagcatacggtatgcaatggactaacaaacatgtaactcgttgtctaatcgaatgc
cgagaagattaccgatacaacttcgaagccgtagactatctcataagatcacacttgatt
agtcttccgcagtacgacgtggctatagcacaggctatagaatcaggtaatggcttggca
acggtattcgccatgcagctagtccagctgtatttaattgacgagagacaggcaacccat
gtaaccgaaacagatttatttcatacgatcgagatattagctcgcatgttgcatcaccgt
tcaccaccagaaggaatttcgctctacagattaacaaacctagtagagtctctacgtgcc
aatcacgattccggtgtattggtagatagagctccagcagggcctacagcgcatattcat
tctggaatcctgcaggtgagagctcgtgatttcgacgatccacctggattgatggataag
acggaatatctgttgcgcgagtgggttcaaatgcatcataatccgcaatatgcacgggat
cctacaaaggcgttcagtatatttgttcatcaaatgaatatccatggaattcttaagacc
gacgatctcatcacgagattctttaaactaagcacacagatgtgcgtcgacctttgctat
cgaaccttatcagaaactggcttagctccttcgattatacgtgcaaagtgctttcactca
ttggacgcatttgtacgtcttgtagcgttactagtaaaacattcaggtgacgctactaat
acgcataccaaaatcaatctcttgaataaggttcttggaattgtagctggtgtgctgttg
caagatcatgagatacgtggcgctgattttcagcagttgccatatcacagaatttttatc
atgctcttcttggagttatgtgcacccgaaccagttctggaagctgtaaacttccaagtt
ttaactgccttttgtcataccttgcacatcttgcgaccggctaaggcatcaggtttctgt
tacgcttggttagagttggtttcgcatcgggtcttcatcggccgcatgctggctatcacg
ccacagcaaaagtgctggggaatgtacgcacagctccttatagatttattcaaatacctc
gctccttatcttcgaaatgcggaattggcgaagcccgtaactagtttatacaaaggaacc
ttacgggtgttgcttgtactgttacatgattttccggagtttctttgtgattatcattat
gggttttgcgatgtgataccaccgaattgcatacaaatgagaaatttgattttaagtgcg
tttccgagaaatatgcgcctacccgatccgtttacgccaaacttaaaggtcgacatgctg
caggagatagcgcttgcgccgcgtgttttgactaattttgcgtctacaattcagccgtta
accttcaagaaagaactcgattcttatttgaaggctcgtgcgccagtcacttttctatcc
gaacttcgtagcaacttacaagtatcgcaagaggctggtgtacgttataacattcagtta
atgaatgctctagtgctttatgtaggcacgcaggctatacaattcattcgtagtaaaggc
catgctccgaacatgtctacaattgcgcattccgctcacatggatatctttcagaatttg
gctgtagacctcgatactgaaggccgatatttgttcttaaacgccatagcaaatcaattg
cggtatcctaacagccacacgcattacttcagttgtacgattctgtatctattcgctgaa
gcaaacaccgaagcgatacaggaacaaataacgagggttcttctggaaagactgattgta
aacagaccgcatccatggggactccttatcacattcatcgagctgattaaaaatccaacg
tataagttttggtcacacgaatttgtacattgcgcgccggagattgaaaagctattcgaa
tccgttgctagatcatgcatggtgcaaaaacaggtgcctgcaactgagacagagattcca
gagtga
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integrated database retrieval system
