Cardiocondyla obscurior: 139105087
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Entry
139105087 CDS
T10704
Symbol
Spel1
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139105087 (Spel1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobs03400
]
139105087 (Spel1)
DNA repair and recombination proteins [BR:
cobs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139105087 (Spel1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
DUF6870
AAA_27
DUF5740
MalF_P2
Motif
Other DBs
NCBI-GeneID:
139105087
NCBI-ProteinID:
XP_070517084
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Position
LG08:complement(7640511..7651856)
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AA seq
922 aa
AA seq
DB search
MAVQPNQQFSMDPPTQQSFVRFFKSLPEKLETTIRFFNRSDYYTLHGSDALFAAQEVFKT
TSVCKMIGAEPHKTEGVILNKSNFETFVRDLLLVKQYRVEVYVNQGSAKNQNWILEYKGS
PGNLSHFEDILFGNNDIAVGVSVIAVKLGTEGKSRVVGLSCVDVVSTLISVVECQDNESF
SNLESLIVTLAPKECLLIQGEGSYEFQTLKQVMERNNVMVTLRKKNEFASDSIINDLNTL
IKFKKGQKQNAQSLPEVNLNLAMSATSALIKYLDLTSDEGHMNQFKLSQIEQSRYIKLDF
AAIKALNIEPHIDTISNLHGNPAASVLTLLDKCRTAHGHRLIAQWVRQPLKDLSLIKERH
DIVELLVQNNELRSILNDDYLKRIPDLQQLAKKLARKKSTLQDCYKIYLCVSHLPKMLEQ
LLSDGNVTALKAMITDPLKELIEDMDKFQQLVEQTVDLDAAEKGDFMVKPGFADDFKTLK
DAMEEIEEIIQRQLNKAASDLCLEAGKTIKLESNQQFGYYFRVTLKEEKALRNKKHYTIL
DSNKAGVRFRNDKLNELNDDFIDARNKYLERQKDVITEIVGIAAGYSETVRTLSGVLACL
DVLTAFASAAISANKVYVRPKMVPSEAGELCLSQVRHPCLEMQQGVDYIANDVDFKRDQC
HFCIITGPNMGGKSTYIRSVGVTALMAHIGSFVPCDKATISLLDCILARVGADDSQLKGL
STFMVEMIETAAILKTATCNSLVIIDELGRGTSTYEGCGIAWSIAEHLARDIKSYCLFAT
HFHEITKLTEEIPTVKNQHVTALVEDNKLTLLYRVKPGICDQSFGLHVAKMANFPPEVIE
FAKRKQAELENYQDVDFEGSDNPEKKRKIIQEGEVLISQFLTKCKALDQSLSDAEVENQV
SLLKKDILSHKNPYIEALLAVS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgcaacctaaccaacagttcagcatggatcctcccactcagcagagctttgtg
agattttttaaaagtctacccgagaaactcgagactacgatacgatttttcaatagatcc
gactattatacgctgcacggaagtgatgccctgtttgccgcacaagaagtatttaaaacg
acatccgtttgtaaaatgattggagctgaaccccataaaacggaaggagttattctgaat
aaaagcaatttcgagacatttgtacgtgatttgttgctagtaaagcaatacagagttgaa
gtttatgttaatcaaggttccgctaaaaatcagaactggatcttagagtacaaaggttca
cccggtaatttatctcacttcgaagacatcttgttcggcaataatgatatagctgtgggt
gtatccgtaatagctgtaaaactgggtaccgaaggaaagtccagagtcgtcggcttaagc
tgcgtggacgtcgtttcaactttaatttcggtggttgaatgtcaagataatgaatcattt
tcaaatttagaatcgcttattgtaactcttgctcctaaagaatgtttgttaattcaggga
gaaggtagttatgagtttcaaactctcaagcaagtgatggaaaggaataatgtcatggtt
actttgagaaagaaaaatgaatttgctagtgattcgattattaatgacctgaacacatta
ataaaatttaaaaaaggacaaaaacagaatgcgcaatcgttgcctgaagttaatttaaat
ttagctatgtctgcaacatcggctctcattaaatacttagacttaacatcagacgaaggc
catatgaatcaatttaaactgagtcaaattgaacagtcgcggtatataaaattggatttt
gcagcgataaaagctcttaatatcgaaccacatattgatacaatttccaacttacatgga
aatccagccgccagcgttttaacgttattagataaatgcagaaccgcgcatggacaccga
ttaatcgcgcaatgggttcgacagcctcttaaagacctttctttaataaaagagcgacac
gatatcgttgaattattagtacaaaataatgaactgagatccattcttaatgatgattat
ttaaaacgcataccagatttgcagcaactcgcgaagaaactagctagaaaaaaatcgaca
ttgcaagattgttacaaaatctatctatgtgtatcacatttaccgaaaatgttggaacag
cttttgtcagacggaaatgtgacagcgttgaaagcaatgataacagatccattaaaagaa
cttatagaagatatggataaatttcaacagctggtggagcaaacggtcgacttagacgct
gctgagaagggtgattttatggtcaaaccaggatttgcagatgattttaaaacattaaaa
gacgcaatggaagaaatagaggaaattattcaacgacaactcaataaagcagcgagtgat
ctttgcttagaagcaggaaaaacgataaaattggagtctaatcaacaatttggatattat
tttcgtgtcacgctaaaagaagagaaagcactgaggaacaagaagcattacactattcta
gattctaataaagctggcgtaagatttcgaaatgataaattaaatgaattgaatgatgac
tttatagatgccagaaataaatacttggagagacagaaagatgttattacagaaattgtg
ggaattgcagccggctatagcgaaaccgtacgtactctcagtggcgtactggcatgtctc
gatgttctcaccgcatttgcttctgcggcaattagtgctaacaaagtatacgtgcgtcct
aaaatggttccaagtgaagcaggcgaattgtgcctttctcaagttagacacccatgttta
gaaatgcaacaaggagttgattatattgctaatgacgttgattttaaaagagatcagtgt
catttttgcattattactggcccgaatatgggcggtaaaagtacttatatcagatctgtt
ggtgtaactgcactaatggctcatattggaagcttcgttccttgtgataaagcgactata
tcattactggattgcatattggcgagagtgggagctgacgattctcaattaaaggggttg
tcaacattcatggtggaaatgatagaaactgctgctattttgaagacagcaacatgtaac
tcgcttgtaattattgacgaattgggtagaggtacgtctacttacgagggttgcggtata
gcatggtcaatagcagaacatttggcaagagatattaaatcatattgcttatttgctacg
cacttccatgagattactaagttaaccgaagaaatacctactgtaaaaaatcaacacgtt
accgctcttgtagaagataataaattaacattactttatcgagtaaaaccgggaatttgt
gatcaaagttttggtcttcatgttgctaaaatggctaattttccgccagaagtaatagaa
tttgctaaaagaaaacaagcagaacttgaaaattatcaagatgtagattttgaaggatct
gataatcctgagaagaaacggaaaattattcaggaaggtgaagttttaatttcgcagttt
cttacaaagtgtaaagccctggatcagtctttatccgatgctgaggtagaaaatcaagtg
tcgttattgaaaaaagacattctatctcacaagaacccttacatcgaggcattactcgcc
gtttcataa
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