Cardiocondyla obscurior: 139105160
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Entry
139105160 CDS
T10704
Symbol
Cpsf2
Name
(RefSeq) probable cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139105160 (Cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139105160 (Cpsf2)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139105160 (Cpsf2)
U7-dependent histone pre-mRNA processing factors
139105160 (Cpsf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
139105160
NCBI-ProteinID:
XP_070517207
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Position
LG08:4808962..4812820
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AA seq
737 aa
AA seq
DB search
MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL
SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD
AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK
ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA
GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN
NPFQFKHLQLCHSMAELNQVPSPKVVLASTPDMECGFSRELFLQWCTNPQNSIILTSRTS
PGTLARDLVEKGGNRNITLEVRRRVRLEGIELEEYQKREKLKQEQMKQEQMETADVSSES
EDEIEVGSGRGKHDLLVKQESKPGFFKQSKKQHPMFPFVEEKIKIDEYGEIIKPEDYKIA
EAVPEVEDNKENIEMKQEEANYHPEVAMDIPTKCVQVSRTMTVNAAVTYIDFEGRSDGES
LQKILAQLRPRRVVLVRGSPKDTEILAQQAQSTGARVFIPGKGETLDATTETHIYQVRLT
DALVSGLNFSKGKGDSEVAWVDAMIMARDQICRDAIADTESENAIDESDKILTLEPLPLN
EVPGHQTTFINELKLSDFKQILNRSNIPSEFSGGVLWCCNNTIAVRRHEGGKVILEGCIS
EDYYKVRDLLYDQYAIV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattataaaacttcatgctatctctggggctatgaatgaatctccaccttgc
tatatattgcaagtggatgaactgagaatattattagactgtggatgggatgaaaacttt
gatcaagactttataaaagaattaaaaagacatgtacatcagattgatgcagtattgctc
tcatatccagatcccctacatttaggtgcattaccatatctagtaggtaaatgtggctta
aattgtcccatatatgctaccatacctgtctacaaaatgggtcaaatgtttatgtatgat
atatatcagtcgcgtcacaatatggaagattttgatctatttactttggacgacgttgat
gctgcatttgataaaattgttcaactaaaatataatcagagtatatcaatgaaaggtaaa
ggctatggtgttacattaacacccttgccagcaggccatatgattggtgggacaatttgg
aaaattgtcaaagttggagaagaggacataatatatgctgtagactttaatcataaaaaa
gaacgtcacctaaatggttgtgaattggaaaggttacagagaccgtcgctactgataaca
gatgcctttaatgccacataccaacaagctagacgaagaacaagggatgaaaaattaatg
actaatatcttacaaacattacgaggcggtggaaacgtattggtcagtgtagacactgct
ggtcgtgtattagaattggcacacatgttggatcagctgtggcgtaataaggaatccgga
ttacttgcttattcattagcacttcttaataacgtgagctacaatgttgtagaatttgca
aaatcacaaattgaatggatgagtgataaattaatgagaagctttgaaggtgcgcgcaac
aatccatttcaatttaaacatttacaactttgtcatagtatggctgaattgaatcaagtt
ccaagcccaaaggtggttctcgcaagtactcctgatatggaatgcggattttcccgtgaa
ttatttttacagtggtgtactaatccacaaaacagtattatattaacgagtaggacgtct
cctggtacacttgctagagatttagtagagaaaggaggtaatcgaaatattaccctggaa
gtaagaagacgagtgagactcgaaggaattgaactggaagaatatcagaaaagagaaaag
ttaaaacaggaacagatgaaacaggagcaaatggaaactgcggacgtaagttccgaatcg
gaagacgaaatagaagttggtagcgggaggggaaaacacgatttactagtaaagcaggaa
agtaaacctggcttttttaaacaaagtaaaaagcaacatcctatgtttccatttgtggaa
gaaaaaattaaaatagacgaatatggagaaatcataaaaccagaggattataaaatagca
gaggcagtacccgaggtggaagataataaagaaaatatagaaatgaagcaggaagaagcg
aattatcatccagaagtagctatggatattccgacgaaatgcgtacaagtttcgcgtacg
atgactgttaatgcggcggtaacgtatatagattttgaaggtagatctgacggtgaatct
ctacagaaaattttagcacagctaagaccgagaagagttgtcttagttagaggttcgcct
aaagatacggagatactcgcacaacaagcgcaaagtaccggtgcaagagtatttattccc
ggcaaaggagagacgttagacgccacaacggaaacacacatttatcaagtacgtttaact
gacgctctagtaagcggattgaatttctcaaaaggtaagggcgattcggaagtggcatgg
gtagacgcaatgataatggcgcgtgatcaaatttgtcgagatgcaattgctgatactgaa
tctgaaaacgcaattgacgaaagtgacaaaatactgactttagaacctttgccattgaat
gaggttcccggtcatcaaactacatttataaatgaattaaaattatccgattttaaacag
atcctgaatagaagtaatattccatcggaatttagcggaggagtattatggtgttgcaat
aacactatagccgttagaaggcatgaaggtgggaaagtaatattggaaggctgcatttct
gaggattactacaaagttcgagacctattgtatgatcaatatgcaattgtatag
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