Cardiocondyla obscurior: 139105510
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Entry
139105510 CDS
T10704
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139105510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139105510
Spliceosome [BR:
cobs03041
]
Complex C
Other components
Step II factors
139105510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_EIPR1
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SCAP
PQQ_2
Beta-prop_NWD2_C
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
139105510
NCBI-ProteinID:
XP_070517759
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Position
LG09:complement(7240936..7244383)
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AA seq
564 aa
AA seq
DB search
MLALKDYGSSDEGSETENVEGMSMLSGKDKFTTNLQICSAPEVVPTGTELCIKHIDSTAT
EVAYNPKYEELFGPEVGPENPFKTQQQHAVKNMLSGYVESAHVNEFQFENQRRTFASYGY
ALDPTIDGSVDEGRVLIGATETAEELDNKTVFENTALRASDKRKRHRNDNPSDIEGFLGP
WGGYIDEKRVIKPSEEEAAELEEILAKRNKRGKQTEEKPLEEKTILHIKNSVDYQGRSFL
HAPQDVGVNLRSESPPDRCFLPKAQIHTWEGHTKGISQIRWFPHTAHLLLSCSMDCRVKL
WEVYKDRRCVRTYYGHRQAVRDVSFDNDGKRFLSAAYDRYVKLWDTETGACISRFTSRKI
PYCAKFNPDPDKQHLFVAGTSDKKIICWDIRSGEITQEYDRHLGAVNTITFVDENRRFVT
TSDDKSLRVWEWDIPVDMKYIADPSMHSMPAVTPSRNQKWLACQSMDNKIVIFSALNRFK
MNRKKTFTGHMVAGYACGLDFSPDMSYLVSGDADGKCYIWDWKTTKLYKKWKAHDGVCID
VLWHPHEPSRLATAGWDGKIKYWD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcactaaaagattacggtagcagcgatgagggtagcgaaacggaaaatgttgag
ggaatgtccatgctttccggtaaggataaatttacgaccaatcttcaaatttgctcggct
ccagaagttgtacccactggaacagaattgtgtataaaacacatagactcaactgcgacg
gaagttgcatataatccaaagtatgaggaactttttggacctgaggtaggaccagaaaat
ccatttaaaacgcagcagcagcatgcagtgaaaaatatgctgtctggttatgtagaaagt
gcacatgtaaatgaatttcaatttgaaaatcaaaggagaacatttgctagttatggatat
gcacttgatccaacaatcgatggcagtgtggatgaaggcagagttttaatcggtgcaaca
gaaacggcagaagaattggataacaaaactgtttttgaaaatactgctttgagagcttcg
gataaacgaaaaaggcacagaaacgacaatccatcagatatagaaggttttttaggtcct
tggggtggttatattgacgaaaaacgagttatcaagccaagcgaagaagaagctgctgaa
ttagaagaaattttagctaaacgaaataaacggggaaaacaaacggaagaaaaacctctc
gaagagaaaactatattacatatcaaaaacagtgtggattatcaaggacgttcgtttttg
catgcgccacaagatgtaggtgtgaacttgagatcagaatcaccacctgatcgttgtttt
ttaccaaaagcgcaaattcatacgtgggaaggacacaccaaaggcatctcgcaaatccgt
tggttcccacatactgcacatttattactgtcttgtagcatggattgtcgcgtaaagttg
tgggaagtatacaaagacaggagatgcgttcgtacgtactatggacataggcaagcagtg
cgagacgtaagttttgacaatgacggtaagcggttcttatcggcagcttatgatcggtat
gtgaaactctgggacacagaaacaggagcttgtatcagtcgctttacgagtagaaaaatt
ccatattgcgccaaatttaatcccgatccagataaacagcatctttttgtagctggtact
agcgataaaaaaattatttgctgggacatacgttctggtgaaataacacaggaatatgat
agacatttaggtgctgtaaataccattacgtttgtcgatgaaaacagacgattcgtcaca
actagcgatgataaaagtctccgggtttgggaatgggatattcctgtagatatgaaatac
atagctgatccatccatgcattctatgccagctgtgaccccgtcacgaaatcagaagtgg
cttgcttgccaaagcatggataataaaattgttatattttcggcattaaaccgattcaaa
atgaatcgaaaaaagacattcacagggcacatggttgcaggatatgcgtgcggtttagac
ttctcgccagatatgagttacttggtgtctggtgatgcggacggtaaatgctacatatgg
gattggaaaacgacaaagttatacaaaaagtggaaggctcacgacggtgtgtgcattgac
gttttgtggcatcctcacgagccttctagactcgctactgctggatgggatggcaaaatt
aagtactgggactaa
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