Cardiocondyla obscurior: 139106255
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Entry
139106255 CDS
T10704
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
cobs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139106255 (Pcf11)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
139106255 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139106255
NCBI-ProteinID:
XP_070518950
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Position
LG10:2968102..2980571
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AA seq
1888 aa
AA seq
DB search
MFTPKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVETHLQKVRSDI
KLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPPK
KLFSLDVRVQSIDPAWPITASSTNIPSGSIHVNPRFLSMPQQTTTTIVPPVKLPPGDPVT
SKEAVMREQVLKKQRELLELQKKKIELELLHAKASLEQQQRQLDKQAGSLKTEVVTTTAS
VTPTTETTTEAKTVPSVVPNQSPKQFSVATASLLKTGATSGPRIAPASSIAVASAKPVSR
DPRLKPTPAVQDVAVPTVDPRQRPGTTSPKETRSEGQAQQVANTIVTSNQLKQQILLKSA
VTINKPPASPAGSDNPTLLNVINNNADNNSNNKNFSSNTNKDAVSHRTSQKKDPRLNSNS
NGNLNSNNSKNSQSLSVCSNNSSSVLSTGSRGSGGNDIKSKESKSSNSRSSSSSLGDKSS
TSSKSSHRKLGNKSRSKQPQICPNKIPKVDRDSSPVRSKSREKDSGDSSPSSRTSPQSFQ
TSKSRKKNTKSRKRSPSPPYRIPRRNDAKSSSNNSGGVTEEEQSGSLIVSPPHPPTFKEI
RPNARQRNYVRRNKDGSLSPERSPASAGNTQIAAEPTLESSSKDEDLRAPLSLPGAAVTI
SEKKEDLDLRVLPSVNTSKRRSEERVESIPPKKTKTEKFDALFGNEDVDLRTLTHPKAGR
PPTPPPPVISGEDGKDSWAKLKTPTKNDRDKQLNSADDKRDRDRNRDRLGRLRLYNKLPD
DPKERRRTLSNEEQETRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGSITKTQYNTL
IQEVLHMSEDRKLRAAQRKEKETGTVIWEKGINMDISGTADRASTFSPSSDKEMMRNKEH
QIPRNPNGPRWQNQPWQQPWAHPPGPPYGGPQGHYNSDMRPVGPWQNPRHFGPMRPDYQY
HSGFNHSMGPNPRLGPGMMGPMGPNGPIMSNLLPNGPMGPMGPMPSSMAMGCHPAMMMNN
GPMSNLMANLPSLSSGRNVSPNTSTKYDIEDNDQSYGNTMLKNPGSHSRELPPPDSKLLT
EVARDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGFQDGTRRILIDEKDTITCAFN
DQYKEFMYEGEVHRIKLGAPTRELYVDDCWYECYFGGLPITIELGGKKVYVKLEGPPPQV
KIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTDALQTVLLNGRP
FKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHVKIMGMRGEGPSESPPPALLVSQKPK
VETTPAPSQLPVVEHESTSQDGLDFPSASKPDLQLDMLSSVLPSAMAPSSGLSYQAEPIE
NTSAPAPILPLNMSELYQRLVETGIVPGLFEQKKQEEEDKKDLEITPVSFDKPETLKNKQ
SAIATALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSARKAHSRPWYYDVSD
WIQFEEIEDLEDRAQSWFETEKQTAETEGVAADDSPQETLQPSVPTGSDEDSRCQVCHDA
FEQFYNEEKEEWHLRPAVNYEGKNYHPLCLEDYKEKSLARSLEKSALALEEAAAEMEESK
VECSEETPGDETKQENTDVGTSNKEQLEPTENVNQVELNVLQLFDSITASENKEKSADTE
EDTEVPQTDTEKKENEESVNEENTENNEKEDPEKNEEETSVTNKEEESPGESVTAPFENI
KIKEEPLDDIDEQPESEMFDFANVEIKEEPMDPEPDPEEIVNESAVVDTTYAAVKSSIDG
NVELDSTSSAIPAPPSRIKINITKPLNINKEPEESKEKEKVAVETPVEENAEQPLIPASI
KPSLQGRKLSNLPPIEKGQELSGLCSIM
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaccaaagtccaaagaagtcgcggatgagtacatctcgtctctgtccgacctt
acaattaacagtaagccacttatcaacatgctcaccatgctggctgaagataacatcgaa
catgcaccagcaattgtgcaagctgtcgagactcatctgcaaaaggtgagaagtgatatc
aagttaccggtactttatctcatcgattcgattgtcaagaatgtgaatggtgactacctg
aatctcttcacacaaaacatagtaaacacgttttgcggagtatttgagaaggtcgatgag
aatactagagccagcatgtggaaattgcgacaaacgtggaatgatgtatttccaccaaag
aaattgttctcgttagatgtacgggtgcaaagtattgatcccgcatggccaatcactgcc
tcatctactaacattccgtcaggatccatacacgttaacccgaggtttctttcaatgcct
cagcaaaccacaacgacaattgttcctcctgtaaaattgccaccaggagacccagtaaca
tcaaaagaagcagttatgcgagaacaagtattaaaaaagcagcgagaattattagaatta
cagaagaaaaaaatagagctggaattgttgcacgctaaagcgagtttagagcaacagcag
aggcaacttgataaacaagctggaagtttgaagacggaagtagtcacgaccactgcaagt
gttacgccaactacggagacaaccacggaggcgaaaactgtaccatctgtagtgccaaat
caatctccaaaacaattttcagtggcgacagcatcgcttttaaagacgggagctaccagt
ggtccacgaatcgcaccagctagtagtatagcagtagcatcggctaaaccagtgtcgcga
gatccacgtttaaaacccactcctgcagttcaggatgtggcagtgccaacagtagatcca
cgacaacggccgggtacaaccagcccaaaagaaacgcggagtgaaggtcaagcgcagcaa
gtggcgaatacaattgtaacttcaaaccaattaaaacagcagatacttttgaaatcggct
gtaactatcaacaagcctccggcgagtcctgccggatccgataatccgacgttattaaac
gttattaataataatgctgataataatagcaataataaaaatttcagtagtaatacaaat
aaagatgctgtctcgcatcggacaagtcaaaagaaagaccctcgattaaatagtaatagt
aatggtaacctaaatagtaacaactctaagaacagtcagagtttatcggtttgcagtaat
aactcgtcttcagtattatcaacaggcagtcgaggaagtggaggcaacgacatcaagtct
aaagaatcgaagagctcaaactcgcgtagctcttcctcgtctttaggtgacaagtcttcc
acttcctctaagtcttcgcacagaaaattaggtaataagtcgcgatctaaacaacctcaa
atctgtccgaataagattccgaaagtcgacagagactcaagtccggttaggtcaaaatct
cgtgagaaagacagcggagacagttcaccgtcctcacgtacctctccacaatccttccaa
acttctaaaagccgcaagaagaatacgaaatcgagaaagcgtagtccaagtcctccgtat
agaatccccaggcgtaatgacgcgaaatcgagctcgaacaattccggtggtgttactgag
gaggagcaatctggttcgctgatagtatctcctcctcatccacctacattcaaagagatc
aggccgaacgctagacaaagaaattatgtaagacgaaataaagacggcagtcttagtccg
gaacgttctccagccagtgctggaaatactcaaatcgctgccgaaccaaccttggaatct
tctagcaaagacgaagatctcagggcaccattgtcactacctggagctgctgttaccata
tccgaaaagaaagaagatttagatctacgagtattaccatctgttaacactagcaaaaga
cgcagtgaagaacgtgtggagtcaattccaccgaagaaaacgaagactgaaaaatttgat
gcattatttgggaatgaagacgtggatttacgtactctgacgcatcctaaagctggtcga
cctccgacacctccaccgcctgtgatttccggggaggatggaaaagatagttgggcaaag
ttaaagacgcctacgaagaacgacagagataaacaattaaacagtgctgatgataagcgt
gatagagaccgaaatagagatagattaggacgtctcagactttataacaaactcccggac
gatcctaaagaaaggagaagaacgttatcgaacgaagaacaagaaaccaggccaggacgc
agaggtcgggaaaatgataaacctgagagaaatgacgatagaaatattgaaataataatg
aagcaagccgctgaacagttgaatcaaggatctattacaaaaacgcagtacaatactttg
atacaagaagtattacatatgagtgaagatcggaaattgcgagcggcccagcgtaaagaa
aaagaaactggtactgtgatatgggagaaaggtatcaatatggacatatctggtactgca
gatcgcgcctcgacatttagtccgtccagcgataaagaaatgatgcgaaataaagagcac
caaataccacgaaatccaaatggaccgagatggcaaaatcaaccgtggcaacaaccgtgg
gcgcatccgccggggccaccgtatggtggaccgcaagggcattacaactcggacatgaga
cctgtcggtccttggcaaaatccacgtcactttgggccgatgcgaccggattatcaatat
catagcggttttaatcacagtatgggacctaatccacgtttaggacctggtatgatgggc
ccgatgggaccgaatggaccgatcatgtcgaatcttttacctaacggcccgatgggacca
atgggacctatgccaagctcgatggcaatgggatgccatcctgcaatgatgatgaataac
ggaccaatgagtaatcttatggcaaatttaccatctctgtcgtctggtagaaacgtatca
ccaaatacatctacgaagtatgatatcgaggataacgatcaaagttacggcaacacgatg
ctaaaaaatcctggctcgcacagccgtgaattgccgccaccagattcgaaactgttaacg
gaggtagcgagagacaccatgaaatccataaatattgataatataccccgagagattcgt
tattacggacaaactggtgtagtatttatgaactgggatgatccacgagagattggtttc
caggatggtacaagaagaatattgatcgacgagaaagatactataacttgcgcatttaac
gatcaatacaaagaatttatgtatgagggagaagtgcatagaattaaattgggtgcaccc
actcgagaattatatgtcgacgattgctggtatgaatgttactttggtggtttgccgata
acaatcgaactcggcggaaagaaagtctacgtaaaattagaggggcctccgccacaagtt
aaaatcggcactgtgaagcgaacggatctcgtagtcgcaaaaatcaatctcattattaat
gcgcgaaatatggtaccggtgtttttggatgccaaaccgcaaatatttgaaatcgaggga
aagcctcatacattagaatttacagatgcattgcagacagtacttttaaatggacgacca
tttaaagtagaatttggaggcttaccaaagcctattattgtcagagataaaaagcatttc
attaggttctccgtattacctagaggagtacgtgctggtcatgtcaaaattatgggcatg
agaggcgaaggtcctagtgaatcgccaccaccggcacttctcgtttctcaaaaaccgaag
gtagaaactactcctgcgccaagccagttacctgttgtagaacacgaatctacgtcgcaa
gatggtctagattttccttctgcttccaagccagatctgcaattagacatgctgtcatca
gttttgccatcagcgatggcaccgtcatccgggttgtcatatcaagccgaacccatagaa
aatacttctgcaccagcaccgatattgccattgaatatgagcgagttataccaaagattg
gtggagaccggtattgttcccggtctttttgaacaaaaaaagcaggaggaagaagataaa
aaagatctagaaattactccggtctcctttgataaaccggaaactcttaaaaataaacag
tcagctattgctacggcattatacagtgggatgcaatgtagttcttgcggcgccagattc
gcacctgaattggccactcggtacagccatcacttggactggcactttaggcagaacaga
cgtgaacgagactcagcaagaaaagcacattcgcggccatggtattacgatgttagcgac
tggatacagttcgaggagatcgaagatttagaagacagagctcaaagttggtttgagact
gaaaaacaaactgcagaaacggaaggtgtcgctgccgatgattcgccccaggaaacgttg
cagcccagtgtaccaactggtagcgacgaagattcgcgatgccaagtatgtcacgatgca
ttcgagcaattttataatgaggaaaaggaggagtggcatttaagaccggctgttaattac
gagggcaagaattatcatccactctgtctagaggattacaaggaaaaaagtctagcgaga
tcgttagaaaaatcagctttggcacttgaggaagcagctgcggaaatggaagaaagtaag
gtggaatgctccgaagaaacgcccggagatgaaactaaacaagaaaatactgacgtagga
acgtcaaataaggagcaactcgaacctacagagaatgtgaatcaagtggaattaaatgtg
ctacaactctttgattcgattaccgcgtctgaaaataaggaaaagtctgctgacacagaa
gaagataccgaagttccacaaactgatacagaaaagaaagaaaatgaagagagtgtcaac
gaagaaaacacagaaaataatgagaaagaagaccctgagaaaaacgaagaagagacgtct
gtgacaaacaaagaagaggaatctccgggcgaaagtgtaactgcaccattcgaaaatatt
aaaattaaagaggagccactagacgacattgacgagcagcctgagagcgaaatgttcgat
ttcgccaacgtggaaataaaggaggaaccaatggatcccgaaccagatcctgaagaaatt
gtaaatgaatcggctgtggtcgacacaacatatgccgcagtgaagagctccatcgatgga
aatgtggaactggattcaacatcatcggccatccccgcgcctccatctcgaattaaaatt
aatattactaaaccgttgaatataaacaaagagccagaagagagtaaggaaaaagaaaag
gtggcggttgaaactcccgtagaggaaaatgcggaacagccattaatcccagcttccatt
aaaccgagtttacagggtaggaagctatcaaatttacctcctatagaaaaggggcaagaa
ttatcaggactttgttctattatgtaa
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integrated database retrieval system
