Cardiocondyla obscurior: 139107172
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Entry
139107172 CDS
T10704
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cobs Cardiocondyla obscurior
Pathway
cobs04140
Autophagy - animal
cobs04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139107172
04148 Efferocytosis
139107172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cobs04131
]
139107172
Membrane trafficking [BR:
cobs04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139107172
Hops complex
139107172
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Beta-prop_WDR19_1st
PipB2_N
YlzJ
Motif
Other DBs
NCBI-GeneID:
139107172
NCBI-ProteinID:
XP_070520635
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All DBs
Position
LG12:6561769..6566082
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AA seq
830 aa
AA seq
DB search
MSAMLTADWFPLGRDTYFRKFELYPISFQHEISSNNLLVAAPYGGSIAVTRNSKKLVKVQ
GATKPLILLYSSSGKLTAKLQWSSGQLVSFGWSQQEELLCVQDDGMVLIYDMFGTYQHTF
SMGNAAKDTKVVDARFFTTSNSTGIAVLTSTNRIFLVNNVCEPKVRPIPDVPRYGPIDCW
YMVHYDRETQVILSNKEGIFVIHQSHQNTYSFNTLFSNKINNIIAIAVSSNNRHIALYSD
TGHLYIGSIDFREKYCECYTNMKEPLANVAWCGTEAVVCSWNSTIMVVGRTADTIIYNYD
GPLHLIPEIDGVRVLSSSSHEMIQKVPNVVQRIFRINSTDPASYLLEASKQFQKKSHKAD
SYIDLVKDKLDTAIRACIDGASHEFDFETQKILMRAAKFGKGFSKTIDSEYYVQMCRILR
VLNAVRHPAVGIPLTYTQFNILTNQVLLDRLVARRHYYLSIQIARHLQLPEIDGESRILA
HWACYKVKQTQLDKEQIAEEIADKLGYAPGVSYSEIAKRAADCGRKQLAIKLIDYEPRAH
QQVPLLLTLGEERAALHKAVESGNTDLVYTVILHLRENMTLGDFQMSIMHCPLAMALYIK
YCQSHNRETLRDIYNQYDDFHSQAVWFITESYQRKNIMSRDALLQSAQENFRLARNDTNA
SLTEEQIKLLKYQRSLEDTLRESVIGKPLHDTVKVLLLRNELKLADKLRSEYKIPDRRYW
WLRIQCLAEKGLWNDLEKFSKSKKSPIGYEPFIDECLKYNEKLEARKYLTKVKEDLKVKY
LVKLNLLSEAAQTAYEQKDTAALTFVLAQCSSSDRQFIDKINMLLSSLKS
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgatgttgactgctgattggtttcctttgggaagagatacttactttcggaaa
tttgagctgtatccgatatctttccagcatgagatttctagcaacaatttattagtggca
gccccatacgggggctcaattgctgtaacaagaaattctaaaaaacttgtcaaagtacaa
ggagcaactaaacctttaatattgttgtattcgtcatcaggaaaactgacagccaagtta
caatggagcagtggacaactggtatcatttggttggtcccagcaagaagaattgctctgc
gttcaagacgacggcatggttctcatatatgacatgtttggcacttaccagcataccttt
agcatgggaaatgcagccaaggataccaaagttgttgacgcaagattctttacaacgtcc
aatagcactgggatagccgttttaacatccaccaatcgtatatttctagtaaataatgta
tgtgaacctaaagtccggccaattcctgatgtgccaaggtatggtccaattgattgctgg
tatatggtacactatgacagagaaacacaagtaattttatcgaataaagaaggaattttt
gtaattcatcaatcccatcaaaacacatattcatttaacacgctcttcagcaataagatc
aataatattatagctatagctgtatcgagtaataatcggcatattgcactttattcagat
actggacatttgtatattggttcaatagacttcagagaaaagtattgcgagtgttacaca
aatatgaaggagcctcttgcaaatgtagcttggtgtggcacggaagctgtagtatgtagc
tggaatagtacgataatggtagtgggacgtacggctgatactataatatacaattacgat
ggtccattacatttgatcccagagatcgatggagtacgtgtattatcaagcagttctcac
gaaatgatacagaaagtaccaaacgtcgtgcaaagaatatttagaatcaattcaacggat
cctgcttcctatcttttagaagcttctaagcaatttcagaaaaagagtcacaaggccgac
agctatatagatttagtgaaggataaattagatacagcaataagagcgtgtatcgatggt
gctagtcatgaatttgatttcgaaacgcaaaaaattctaatgcgagctgccaagtttgga
aaaggattcagtaaaacaatagattcggaatattacgttcaaatgtgtagaattttgaga
gttttgaatgcagtgagacatcctgctgtgggaattccattaacatatacgcaatttaac
attcttacgaatcaagtgctattagatcggctggtagcacgaagacattattatttaagc
atacaaatagcgcggcatttacaattacctgagatcgatggagaaagcagaatattggca
cattgggcttgctacaaagtgaaacaaacacaattagataaggaacaaatagcagaagaa
atcgctgataaattgggatatgctcctggtgtttcatatagcgaaattgcaaaaagagca
gcggattgtggacgaaaacaattggctattaaattaatcgattacgaaccacgtgcgcat
caacaagtacctttgctcttgacacttggcgaagaacgtgctgcgctgcataaagcagtg
gaaagtggtaatacagatttagtttacactgttattcttcatctcagagaaaacatgact
cttggagattttcaaatgtctataatgcattgtcctctagcaatggcattgtatattaaa
tattgccagagccataatagagagacattgcgtgatatctacaatcaatacgacgatttc
cattcacaagcagtgtggtttataactgaaagttatcaacgaaaaaatataatgtcgaga
gatgcattactgcaatctgctcaggaaaatttcagattagctcgtaatgatactaacgca
tcgttgacagaagaacagataaaactgttgaagtatcaaagatcgttagaggacacgtta
cgtgaatcagttatagggaagcctctacatgacactgtgaaagtattattattgcgcaac
gagttgaaattagcagataagttgcgatccgaatataaaataccagatcgaagatattgg
tggttaagaatacaatgcctagcagaaaaaggattatggaacgatttagaaaagttttcc
aaaagtaaaaagtctcccattggttatgagccgtttatagatgaatgtctcaagtataat
gaaaaattagaagcaagaaaatatttaaccaaagttaaagaagatctcaaagtaaaatat
ctagtaaaattaaatttacttagcgaagcagcgcaaacagcgtacgaacagaaggatact
gcggctctcacatttgtgctagcacaatgcagctcatccgatagacaattcattgataag
attaacatgttattatctagtcttaaaagttaa
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