Cardiocondyla obscurior: 139107674
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Entry
139107674 CDS
T10704
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139107674
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139107674
Spliceosome [BR:
cobs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139107674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
Ank_2
nSTAND3
Ank
AAA_19
HA2_N
AAA_22
Ank_4
PhoH
Ank_5
ATPase
UvrA_inter
ResIII
T2SSE
AAA_7
NPHP3_N
TsaE
AAA_16
nSTAND1
SRP54
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
139107674
NCBI-ProteinID:
XP_070521561
LinkDB
All DBs
Position
LG13:complement(5088422..5094132)
Genome browser
AA seq
1153 aa
AA seq
DB search
MPRRKQQRHRPIGEDTRIAVNLTLKKLLNTVDQKELEFPSSYTAEERAYIHELAKELGLK
SKSRGKGTNRFLTVYKREGSTIVQADAVIKLQKPSKQSIYNLMQTYPLNHKECQDLLPPT
ERERPLNNDVNTNTKAMGRLNNSIPQVPQLKTNFDVLHFRKSLPIFNAREEILNALNNHQ
VVIIAGETGSGKTTQVPQYILEHCQQKHQACRIICTQPRRLSAVSVAERVAFERDEKIGQ
TFGYQIRLESRVAPKTLLTYCTNGVLLRTLMGGDSALTTLTHIIVDEVHERDRFCDFLLI
ALKDALVKYRSLKLVLMSATMDTTIYAKYFNKCVVVNVPGRSYDVDVYFLEDVLKITGYM
TKEMLAKKKELLKWKDKQKTLESWKQYKPQNRNTKNEKSLLPAPILAQQSEPIPEKVKLE
SWLEGIEEMDKSLFDAWVTGREDNFAQLLHFILSENVSVDYQHSETFITPLMAAAARGCI
NTTEQLLNLGANLNLRSANDWTALDWAKNRNHTECAELIEAYMKTYDCTIPSNELAHVAE
TSLSEEDKLSLDIYHHTFNDDNIDYDLLLELIFYIHLKSPPGSILIFLPGYDDIVTMKEK
INAEDKKMNQGLRYNLFVLHSNMQTCDQKKVFKPSPQGTRKIVLSTNIAETSITIDDIAY
VIDSGKVKEKAFDAISGVCTLTSNWISKACAKQRKGRAGRCRRGICYRLFSSVRYDNMQD
YQTPEILRLPLQELCLYAKHLTSGNTPIAEFLDKALEPPSNVVTRNAVQLLKTIDALDPW
EDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPILTIVCCLAYKDPFILPLQPSQKRAL
TVARKKFATGTFSDHMVVLRAFQGWQNARASGKERAFCEKNFISAPVMEMVVGMRTQLLG
QLRASGFVRARSPGDIRDLNSNSENWAVVKAALTAGLYPNLIRVDREHMQLRTQKEVKVF
FHPSSTLRDDLKSSRMTSAQIHATNVQSLPCDWLLYEEMSRTGRFCHVKVVTLVNPLTVA
LFSGPARLPMDVIYEAEVVPESESDSEVDETHDGTIFKLDDWVVFKLDPETAQLFLHLRQ
KWNALFLRRMKAPNKAMSALDEKVINTLVTVITNEEQACGLQQPAGIGQRPRPLIVDYYP
ANVRRDDYPERYF
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgccacgaagaaaacagcagagacatcgccccataggggaggatacccgtattgcggta
aacctgactctaaagaaattgctgaacactgtggatcagaaggagttagaatttccatcg
tcgtatacggcggaggagcgggcatacattcacgagctggccaaggagcttggcttgaag
tcaaaaagccgcgggaaaggtacaaaccgatttttgacagtatataagagagaaggctca
acaatagttcaagcggatgctgtgataaagttgcagaaaccttcaaaacagagcatatat
aatttaatgcagacttatccattgaatcacaaggaatgtcaagatctgcttccaccaact
gagagagagcgtcctcttaataacgatgtgaatacaaacactaaggcaatggggagactg
aacaatagtataccgcaagtacctcagttaaaaaccaattttgatgtactgcattttcgt
aagtctcttccaatttttaatgcaagagaagaaattcttaatgcactaaacaatcatcaa
gtggtgataattgcgggtgaaacgggaagtggtaaaaccactcaagtgccacaatacatt
ttggagcattgtcagcaaaagcatcaagcttgtagaattatttgcacgcaacctagacga
ttgtcggcagtatctgtggccgagagagtagcgttcgaaagagatgaaaaaattggccaa
acttttggatatcaaataagactggagagcagagtagctcctaagactcttttaacatac
tgtacaaatggagtgctgcttaggactttaatgggcggtgattctgctttgactacactg
acgcatatcattgtcgatgaagttcacgaacgagacagattctgtgactttcttttaata
gctttaaaagatgcgctagtcaaatatcgttccttaaaattagtacttatgagcgccact
atggatactactatctatgccaagtattttaataaatgtgtcgtcgttaacgttcctggt
cgatcgtatgacgtggatgtatactttctagaggacgttttgaaaattactggttacatg
acgaaagaaatgctcgcaaaaaagaaagaacttttaaagtggaaagacaagcaaaaaacc
ttggagtcttggaagcaatacaagcctcagaatagaaatactaagaacgagaagagttta
ctgcccgctccaattttagcccaacagagcgaacctataccggagaaagttaagctagaa
tcctggctagaaggaatagaagaaatggataaaagtctttttgacgcatgggtgaccggt
agagaagataattttgcgcaacttttacattttatattatctgaaaatgtttctgtagat
tatcagcattcagagacttttataacaccgttgatggccgctgcagctaggggctgcata
aacacaaccgagcaacttttaaatctaggtgcgaatctcaacttgagatcagctaacgat
tggactgcgttagattgggcaaagaataggaatcataccgaatgtgccgagttaatcgaa
gcttacatgaaaacttatgactgtacgataccgagtaatgaactggcgcatgttgcggag
acgtcactttccgaagaagataaattatcgctcgatatataccaccatacgtttaatgac
gacaatatcgattacgatttattgttagaattgatattttacattcatttaaaatcgcca
cctggttctattctaatatttctaccaggatacgacgacatagttacgatgaaagaaaaa
ataaatgcggaggataaaaagatgaatcagggtctgcgctacaatttgttcgttcttcat
tcgaatatgcagacttgcgatcagaaaaaagtttttaaacctagtcctcagggcacgcga
aagattgttctttctacgaatatagccgagactagcatcacgattgacgacatcgcatat
gttattgactcaggaaaagttaaagagaaggctttcgatgctatatcaggtgtgtgcaca
ttaacttcaaactggatatctaaagcttgtgcaaagcaacgaaaaggtagagcaggtaga
tgtagaagaggaatctgctatcgcctgttttcttcggtacgatacgataatatgcaggat
tatcaaacacctgaaattctgcgattaccgctgcaagaactctgtttatatgcgaaacat
ttaacttcgggaaacacgcctatcgctgaatttctggataaagccctggagccaccgtct
aacgtagtgactaggaatgcagtacagttattgaagacaatcgatgcgttagatccttgg
gaagatctaactgaattagggagccatttattagatttgccaattgaaccaagactcggg
aagatgctgttgtatgccgtcgttctgaaatgtttagatcccattttaacgatcgtttgt
tgtctagcatacaaggatccctttatattgccattgcaaccgtcgcaaaagagagccttg
accgttgcacgaaaaaaatttgccactggaacgttttcggatcacatggtggttttgaga
gcgtttcaaggctggcaaaacgctagagcaagcggcaaagaacgtgccttttgcgagaaa
aattttatctccgctcctgtgatggaaatggtagttggaatgcgtacgcaacttctcggt
cagttgcgggcgtccggttttgtaagagccagaagccccggagacattcgagacttaaat
tcaaactcagaaaattgggcagtcgtaaaagcagccttgacagcaggcttatatccgaac
ttgatacgagtggatcgagaacatatgcagctacgcacacagaaagaggtcaaggtattt
ttccacccttcgtcgactttaagggatgatctgaagtcttcaaggatgacatctgcgcaa
atacatgcaactaatgtacaatctttgccgtgcgattggttgctgtatgaagagatgagt
cgtacaggacgtttctgtcatgtgaaagtagttacactcgttaatccgttaactgtagcg
ctatttagtggaccagctagattaccaatggatgtaatttacgaagctgaagttgtgcca
gaaagcgagtcggattcagaggttgacgaaactcatgatggaaccatttttaagcttgat
gattgggtagtctttaagcttgatcctgaaacggctcaactattcttacatttacggcag
aagtggaacgctttgttccttagacgtatgaaggcacccaataaagcaatgtcagcctta
gacgagaaagttattaacactttagtaactgtgatcacgaacgaggaacaagcatgcggt
cttcagcaacccgctggtatagggcaacgtccacgtcctttaatcgttgattactatccc
gcaaatgttagaagagacgattacccagaaagatatttctaa
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