Cardiocondyla obscurior: 139107689
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Entry
139107689 CDS
T10704
Symbol
Soxn
Name
(RefSeq) transcription factor Sox-2 isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cobs03000
]
139107689 (Soxn)
Transcription factors [BR:
cobs03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139107689 (Soxn)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
DDHD
TFIIA
Motif
Other DBs
NCBI-GeneID:
139107689
NCBI-ProteinID:
XP_070521585
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Position
LG13:5606106..5858911
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AA seq
509 aa
AA seq
DB search
MHTMETDMKGGSLHAQIPPHPHQGVSPMGHHTGMSPYGPLGSIVHSSALSGSPPSASSLG
LGLQHHHQTSQHHYASMQAAAVAAAAAQQQQQQQQSMHAMAAQQNAQQQQHHSHQQGQQQ
QSQSQHHQANNHSNPNNPNNPNNSSSAKNNNMDRVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLIKKDKFQ
LGGGVGGVGGMLGVDQRQVATSGGPQQSQLPRDVYQMPNGYMPNGYMMHDPAAYQQHVAY
GGHMGGAAAAASAVAYPRYESMGHHMGGGSPSPINSYMNGYGGYGGSTVPGGSPSPYHQA
QPGSQISSHSPSGSSIKSEPTSPASGGGIHTPTPTGGPTTTGAGPAGQAVKREYMGQPQA
NQQAPQGDLRQMISMYLPQGVEQGVVQHGGGVYSPGPSPDSLTQHHAAMQPIAHMSDSDR
KMLNPETGCYSESVRAWYQWPVKGYVTLH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgatggagacggacatgaagggcggcagcctgcatgcccagataccaccgcat
ccgcaccagggtgtatcgccgatgggccatcacacggggatgtctccttacgggcctctg
ggctcgatagttcacagctccgcgttgtcgggaagtccgccgagcgcgagcagccttggt
ctcggtcttcagcatcatcaccagacctctcagcatcattacgcgtcgatgcaagcagct
gccgtcgcggctgccgctgctcaacagcaacaacagcagcaacagagtatgcatgcaatg
gcggctcagcaaaacgcccagcaacagcagcatcactctcaccagcagggccagcagcag
cagtcgcaatcgcagcatcaccaggccaataatcatagcaatccgaacaacccgaacaac
ccgaacaactcttccagcgctaaaaacaataatatggatcgcgtaaaaaggccaatgaac
gccttcatggtatggtcgcgcggacagcggcgcaagatggcacaggagaaccccaagatg
cacaattccgaaatatcaaagcgtcttggggcagaatggaagcttctcagcgaggcggaa
aagcgcccgttcatcgacgaagctaaaagactgcgcgccgtacatatgaaagagcacccc
gattataagtacaggccgcgccgcaagacaaagacattgattaagaaagacaagtttcaa
ctcggcggaggtgtcggcggcgtcggcggtatgcttggcgtcgatcaacggcaagtcgct
accagcggcgggcctcagcagtcgcaattgccgcgcgacgtatatcagatgccgaacggt
tatatgccaaacggttacatgatgcacgacccggccgcgtatcagcagcacgtcgcgtac
ggcggtcacatgggaggtgccgcggcggctgcctcggccgtagcttacccgaggtacgag
tccatgggccatcacatgggtggcggtagcccaagtcccatcaacagctacatgaacggc
tacggcggctacggcggttccaccgtacctggcggttcaccctcgccctatcaccaagca
cagccgggatctcagatatcgagtcatagtcctagtggcagcagcataaagtccgagccg
acgagcccggcgagcggcggcggcattcacacaccgacgccgacgggcggcccaacgacg
acgggcgctggtccggccggccaggccgtcaagcgggagtatatgggccagccacaggcg
aatcaacaggcaccccagggcgacctaaggcagatgatctcgatgtacctaccacaggga
gttgaacagggagtcgtgcaacacggtggtggcgtgtactcaccgggaccgtcgcctgat
tctttgacgcagcatcacgcggctatgcaaccaatcgcgcacatgtcagatagcgatcgt
aaaatgttgaacccggaaaccggctgctactccgaatctgtacgggcatggtatcagtgg
ccggtgaaaggttacgtgacgctacattaa
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