Cardiocondyla obscurior: 139108248
Help
Entry
139108248 CDS
T10704
Symbol
Rrp42
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139108248 (Rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139108248 (Rrp42)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
139108248 (Rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
139108248 (Rrp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
139108248
NCBI-ProteinID:
XP_070522476
LinkDB
All DBs
Position
LG14:299823..301690
Genome browser
AA seq
292 aa
AA seq
DB search
MAETPLSLGEKTFIIHGIDLDLRNDGRSRHQYRSIEIETRLMKHAHGSARLRIGNITDIL
VGVKVEIDTPHAEKPHEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTPNAF
DLKQLCIIPYKKCWRMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGEPD
IQISDDLYDCIKLDVTNYPLVVTVCKVGDNFVIDPTSEEESCSTASILMSVMPDSKVTSV
VKLGYGSLLPNTLVKMLQVGKDVGIKLNEALMKGLEDENKLGPTKPIFGFLR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacccccttgagtttaggcgagaagacgtttatcattcacggaatagacctt
gacctaaggaacgatggcagatctaggcatcaatatcgctccatcgaaatcgaaaccaga
ttaatgaaacatgcacatggatcagcaagattacgtataggcaatattacagatatatta
gtcggtgtaaaagtggaaatcgacacgccgcacgctgaaaaaccacacgagggcaaatta
gatttctttgtggactgctctgctaatgcaacaccagcatttgaaggtaaaggtggagat
gatttggcaactgagataagcaatgttctttctatggcttatcagacaccaaatgccttt
gacttaaaacagctgtgcataataccgtataagaagtgttggagaatgtatgtagacatt
ttaattcttcaatgcggtgggaatttattcgatgccgttggcgctgcagtaaaagcggca
ttgtacaatactgaaattccaagggtgattactgcaactcttgacggtggcgaaccagat
attcagatatcggatgatctttatgactgcattaaactggatgttacaaattatccactg
gtagtaacagtatgcaaggtcggtgacaatttcgtgatagatccaacgtcggaagaagaa
tcctgcagtacagctagtatccttatgtccgtgatgccagacagcaaagtgacgtctgtg
gtcaaactaggatatggtagcttgctacctaataccttggttaagatgttgcaggtcgga
aaagacgttggtatcaaactgaatgaggcacttatgaaaggactggaagatgaaaataaa
ctcggtccgacgaaacctatatttggctttttacgataa
DBGET
integrated database retrieval system
