Cardiocondyla obscurior: 139108296
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Entry
139108296 CDS
T10704
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03013
Nucleocytoplasmic transport
cobs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139108296 (Upf1)
03015 mRNA surveillance pathway
139108296 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139108296 (Upf1)
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139108296 (Upf1)
5.6.2.5 RNA 5'-3' helicase
139108296 (Upf1)
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139108296 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
139108296 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
139108296
NCBI-ProteinID:
XP_070522538
LinkDB
All DBs
Position
LG15:complement(2954129..2960918)
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDATQTQSSQ
PIQVNGTNGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETILECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKFPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGATTSA
RNKSGSRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAV
GEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGAQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacgggcccagcagccaaaccctcacgttcctcgacaccgaggag
accgatctgatcggcgcggacacccagggcagcgagttcgacttcaccgacttcacctta
ccgtcgccaagccagacccaggcctctcagcacgacgcgactcagacgcagtccagtcag
cccattcaggtcaatggtacaaatggcagttcgtcgctggatttaaagatttctggagca
gctcagagtcttgctgagttgcagtttgaagaagaggaggaagaagcatattataaccga
gatttgcctgaacatgcatgtaaatactgtggcatccatgaagcatcttgcgtcgttatg
tgcaatgtctgtcgaaaatggttctgtaatggacgcggaaatacatctggatcgcatatt
attaatcatcttgttcgtgctaaacacaaggaagttacattacacagagatggcccgctc
ggagaaacgattttggaatgttattcctgcgccacgagaaacgtttttgtactgggtttt
attcccgctaaagctgattccgtagttgtattgctctgccgccaaccatgtgcggcacaa
agttctttaaaggatatgaattgggatcaagaacaatggaaacctttaatcgaggatcgg
agctttttgtcttggttggtgaaatttccatctgaacaagaacagctaagagctagacag
atttctgcgcaacaaattaataaattggaggaattatggcgagacaatgttgatgctact
ttccaagatttggaaaaacctggagtagatgaggaaccgcagcaggttttattacgttac
gaagatggatatcaatatcaaaatatttttggcccgcttgtgaaattggaagccgattat
gataaacgtttgaaagaatctcaaactcaagagaatattgaagtacgatgggacgttgga
ttgaacaaaaagactattgcttactttatgttagccaaaactgacggcgatatgaaattg
atgcacggagatgaattaagacttcgctatttgggagaacttcacaagccttggtctgga
attggacacgtgataaaaattcccgataattatggagaggaagtcgggattgaattgaaa
aacaattctggagcgccgacagaatgcattagcaattttgtcgttgattttatttggaaa
agtacaagttttgatcgaatgcaatctgcgttacgcaaatttgccgtagatgacacatct
gtatcggcttacatatatcacagattattgggacacgaagtagaagaagttttattccgt
tgtcatctccctaaacattttagcgcaccaaatttacctgacttaaacagatcacaagta
tacgcggtgaaacacgcgatacaacgaccattatctttgattcaaggaccacccggaacg
ggtaaaactgtaacgagtgctactatagtttatcaattagtgaaacaaaacggtggtcct
gttcttgtatgcgctccttcgaatactgctgtcgatcaattgactgaaaagatacataaa
tcaaatttgaaagtcgtacggttgtgtgccaaatcacgagaagccatcgattcgccagta
agtttccttgcgttgcataatcaaataaagaatatggagacaaacaccgaattgcaaaaa
ttgcaacagttaaaagacgagacaggtgaattgtcaagtgttgacgaaaagcgctataga
ttgttgaaaaaagctgcggaaaaagaacttttagaagcggccgatgtaatttgttgtacc
tgcgtcggcgctggtgatccaagattgcacagattgaagttccattcaatacttatcgac
gagagcatgcaagctaccgaaccagagtgcatggtgccagttgttttaggagcgaagcaa
ctgattctagttggagatcattgtcaattaggcccggtagttatgtgcaagaaagctgct
agagccggtttatctcaatctctatttgaaagactggtggttttgggaattagaccgttc
cgtttggaagtacaatatcgtatgcatcccgatctgtcgcgatttccatctaatttcttt
tatgaaggatccctgcagaatggagtttgtgcagatgagagaaaattattgaaaattgac
tttccctggccagcaccagataaaccaatgttcttttatgtcacgcaaggtcaagaggag
atagcaggaagtgggacatcttacttgaatcgtacagaagcgtctaatgtggaaaaaata
acgacacgatttttacgttgcggcgtgaaaccagagcaaattggagtaataactccgtac
gaaggtcaacgggcctatcttgtgcagtatatgcagtatcaaggttccctgcactcgaaa
ttatatcaagaaattgaagtagcaagtgtggacgcttttcaaggacgagaaaaggatatt
ataataatgtcttgtgtgagatctaatgaacatcaaggcattggatttttaaacgatcct
agaagattgaacgtggcgttgactcgcgcaaaatacggtatcattatcgtaggaaatccc
aaggtactttcaaagcagccgctttggaaccacctgctcagcttttacaaggagcagaag
gtgttagtcgaaggaccattgaacaatctgaaagagtctatgattcaatttgctaagcca
aagaaactcgtgaatgcggctaacccgggctcgcacttcatgtctacgtcgatgtacgat
gcgcgcgaagctctgatccccggatcggtgtacgaccgttctggcgcacaggtgaacggc
acacagaatcacaatccgtactatcaaagaaacgtgccgctcgacatttttagccgtact
catgataccataagctacatcagtccggaacgggcacaagcggcgatgaacaatatgccc
gtgcccgttggtatgttcatgaacatggcgcacgtgccgccgcgtttctacaatcaacac
cagcaagcgttgcaggcacgtcagaatcagagaaaccgccgcggtgccaccacctcggcg
agaaataaatcgggctcgcgtatgggcaagctaagtcagaccgagcaaaacacacagccg
tacagtcagccaggtctgccgttaacacagggcacgacccagggcatgtctcagccgggt
ttcagtctttcgcagcctggtctcagtcaggcggaactttctcaggactcgttcgcagtt
ggcgaatttcaatcgcagatggacggccttttgtctcaggattcgacctatcagggcgac
cgaagtggtttttatcaatcgggccagtcgcaagccggagcacagttctcgcagccctac
tga
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