Cardiocondyla obscurior: 139108403
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Entry
139108403 CDS
T10704
Symbol
Caf1-55
Name
(RefSeq) chromatin assembly factor 1 p55 subunit isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03082
ATP-dependent chromatin remodeling
cobs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139108403 (Caf1-55)
03083 Polycomb repressive complex
139108403 (Caf1-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cobs03036
]
139108403 (Caf1-55)
Chromosome and associated proteins [BR:
cobs03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
139108403 (Caf1-55)
Histone modification proteins
HAT complexes
HATB complex
139108403 (Caf1-55)
HDAC complexes
Sin3A-HDAC complex
139108403 (Caf1-55)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
139108403 (Caf1-55)
PRC2.2
139108403 (Caf1-55)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
139108403 (Caf1-55)
Heterochromatin formation proteins
Other heterochromatin formation proteins
139108403 (Caf1-55)
Chromatin remodeling factors
NuRD complex
139108403 (Caf1-55)
NuRF complex
139108403 (Caf1-55)
NuRF complex (fruit fly)
139108403 (Caf1-55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_DCAF12
ANAPC4_WD40
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_RIG_1st
MIOS_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
139108403
NCBI-ProteinID:
XP_070522745
LinkDB
All DBs
Position
LG15:complement(4624673..4628571)
Genome browser
AA seq
483 aa
AA seq
DB search
MEARHRRMSYTNALANIKKSIELNSNDTSVPIKIAKVEVNAKEESNISKRSINKRKLKWI
NQKGFDDAVEERIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSI
HRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINH
EGEVNRARFMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL
SWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDVAWHLLHESLF
GSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL
RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSSEDAEDGP
PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPGSEIET
GGS
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggaagcacgtcatcgtcgcatgtcatatacaaatgctcttgcaaatattaaaaaatct
atagaattaaattcaaatgatacttctgtaccaattaaaattgcaaaagtggaagtgaat
gcaaaagaagaatcaaatataagtaaaaggtctataaacaaaagaaagttgaagtggatt
aatcagaagggttttgatgatgcagtggaggaacgtattatcaatgaggagtataaaata
tggaagaagaacacaccatttctatatgatcttgtaatgacacatgctttggaatggcca
tctttaacagctcaatggttgcctgatgtcaccagaccagagggaaaagattattcgatc
cataggctaattttgggcactcacacatcggacgaacaaaatcatttgctcattgctagc
gtacagttaccgaatgaagacgcgcaatttgacgcttctcactatgacaacgaaaaaggt
gaatttggaggtttcggatctgtgagtggtaaaattgagattgagatcaagattaatcat
gaaggggaagtcaatagagcacgtttcatgccgcaaaatccttgtgtgatcgcgacaaag
accccttcaagcgacgtgcttgtatttgattatactaagcatccaagtaaaccggatcct
aatggcgaatgccatccagatttaagattgcgaggacatcaaaaggaaggctatgggctt
tcatggaatccgaatctcaatggatatttgcttagcgcgtctgatgaccatacgatctgc
ttgtgggatattaatgctacgccaaaagaaaatcgcgttattgacgcaaaaactatcttt
acaggacataccgctgtggtcgaagatgtcgcttggcatttactccatgagtcattattt
ggttccgtcgctgatgatcaaaaacttatgatctgggacactagatgcaacaatactagt
aaaccaagtcatactgttgacgctcacaccgccgaggtaaattgtttgagttttaatcca
tattctgaattcatactggccactggcagtgcggacaagacggtagcgctttgggatttg
cgaaatctgaaattgaagttgcattcatttgaatcacacaaggatgagatattccaagtt
cagtggtcaccacataatgaaacaatattagcaagcagtggcacagatagacgattacat
gtctgggatcttagcaagattggcgaggaacagtctagtgaagatgccgaagacggaccg
cctgaacttctgtttatacatggtggtcataccgcaaaaattagtgatttctcgtggaat
ccgaatgaaccgtgggtcatatgctcggtatcagaggataacataatgcaagtgtggcaa
atggcggagaatatttataatgatgaagaacctgaaacacccgggagcgagattgaaact
ggcgggtcataa
DBGET
integrated database retrieval system
