Cardiocondyla obscurior: 139108594
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Entry
139108594 CDS
T10704
Symbol
U4-u6-60k
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139108594 (U4-u6-60k)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139108594 (U4-u6-60k)
Spliceosome [BR:
cobs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
139108594 (U4-u6-60k)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
139108594
NCBI-ProteinID:
XP_070523126
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Position
LG01:complement(4880860..4883673)
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AA seq
523 aa
AA seq
DB search
MSDDEDLVYVKKQKTVHYGSLEEAERVRLVAAIESADEEKEITNTNDIVNVSISGGNIHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDFEVKKHLRQLGEPICLFGEGPAD
RRTRLRELLASVGEDAIKKKHEEEDKPSHPIEKDTESTWYHEGPDSLQIARSWIAAYSLP
RAKARLDKAREDLSLPAATRTAKRQELLKKLQALSIHCSQIGDRRPISFCQFSPNSKILA
TASWSGLCKLWSVPDCTLLRTLQGHNCNVGCIVFHPKATITEDVVGDNAGQTCVLASCAG
NGSVKLWSGGTGEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARAVHCISFQCDGSVCATGGHDSFGRVWDLRTGRCIMFMEGHLTSLFGIDFSPNG
FHIATASEDNTCKIWDLRKRTCIYTIPAHTNLLSDVKYQRTEGQYLVTASYDNTAKIWSN
KTWQPLKMLPGHDGKVMSVDVSPDHKFIATSSYDRTFKLWAPE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgaggatttagtttacgtaaagaaacaaaaaactgttcattatggatcc
ttggaagaagcggaacgtgtacgacttgttgcagcaatcgagtctgcagatgaagaaaag
gaaatcacaaatacaaatgatattgttaatgtttccatctcagggggaaatatacatatc
tcaaatgaatatatggagctggaggatgaaatgtccaaagatcgacaggcattgctggaa
gaatttgaacgtaggaaaaaagccagacaaattaatgtatctacagatgactttgaagta
aaaaagcatctaagacaattgggagaaccaatttgtttatttggagagggtccagcagat
agaaggacaagattaagagaattattagccagtgtgggagaagatgctattaaaaagaaa
catgaagaagaagataaaccatctcatccaattgagaaagatacagagtcaacttggtat
catgagggtcctgattctttgcagattgcacgatcatggatagcagcatattcattaccc
agagcaaaagcacggctagataaagcaagggaagatctttcattaccagctgcaactcgt
actgcaaaaagacaagaacttttgaagaagctgcaagcattgagcattcattgctctcaa
atcggcgacagaagacctatttctttttgccagttcagccctaattctaaaatccttgct
acagcttcatggtcaggcttatgcaagttatggtctgtacccgactgtactttgttacgt
actttacaaggacacaattgtaatgttggctgtattgtttttcacccaaaagctacgata
accgaagatgtggtaggtgataacgcagggcaaacctgcgtgttagcgtcctgtgcagga
aatggcagtgtaaaattatggagcggtggtactggcgaagaaccattggcagaagtggaa
ggacatgaacctcatagagtgtcaaggatagcctttcatccgtctggacgatttcttggt
acttgttgttacgacgcatcttggcgattgtgggatttagagcaacaagcggaagttctt
caccaagaaggtcatgctagagctgtacattgtattagttttcaatgcgatggaagtgtt
tgtgctactggtggtcacgattcattcggcagagtatgggatttgcggactggtagatgt
ataatgtttatggagggtcatctaacatcccttttcggtatcgatttctcgccaaacggt
tttcatatagcaacggcgagcgaagataacacttgcaagatatgggacttgcgaaagaga
acttgtatatacacgataccagcgcatactaatttgttgtctgacgtgaagtatcagaga
acagaaggacaatacttggttactgcatcttatgataatacagccaaaatttggtccaac
aaaacatggcagcctctcaagatgttaccaggtcacgatggaaaagtcatgtccgtggat
gtgtcgcccgatcataaattcattgcaactagttcctacgacagaactttcaaattatgg
gctccagaataa
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