Cardiocondyla obscurior: 139108804
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Entry
139108804 CDS
T10704
Name
(RefSeq) uncharacterized protein
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cobs Cardiocondyla obscurior
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cobs03041
]
139108804
Enzymes [BR:
cobs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139108804
Spliceosome [BR:
cobs03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
139108804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
139108804
NCBI-ProteinID:
XP_070523501
LinkDB
All DBs
Position
LG02:11365947..11379262
Genome browser
AA seq
1220 aa
AA seq
DB search
MAQYIAHDINKKQRTSDIKIEGNVTFSQMKLRRDILDGLMSAGFQKPSPIQLKAIPLGRC
GFDLIVRAKSGTGKTLVFGIIALETLDISIHLPQILIIAPTREIAIQITHVIQTIGSKIE
GLKVDYFVGGISIEEDKKKLSKCHIAVGAPGRIKHLIEKGFLSVSKVRLFVLDEADKLME
INFQTDINHIFSKLPSSKQIIASSATYPGDLETFLQTYMSSPVLTSPNIDGPILIGIRQF
VTVVPTHPNAMKELQTKVDELVKIFTKISFKQSLVFTNYQSRAQSVSNKINSLGFSTSYI
AGNQNMTKRLEAIENLRNLEHRIMLTTDLTARGIDIENVNMVINLDIPMDVTTYLHRIGR
AGRYGSYGISITIISESELSSFKKLLTSIDGLSFYLFKLSSDYTEDVWSDDISTFEKIDL
ESEINLKKFLSLDAAIVESENGEPIKIPISEHIVPSKNNGISSKNNVSTANDEKSNNVSS
KNTASSDISQKVSSNTIAKYNKMSPKSIPTMLSSKNNVENIKIKCEKQKLRKKKKYHETI
SDDVPVRARSVLDKQIKISSLLQHYNQGKIDSTIDASIECKEISNIESAVENFTDYKVLT
SSKNIYTFTMTPDSENPSVMEKLNENVVFKVALSDVENCKLLDTSVKKIMQYMKDSLIVE
EENGTSISNYEKEDDNEKTFIQISQNTVSIKDLDLTHNLPINKLDNSEDDHIRIIINNYL
TTYGTKVIESDNNVCNDEESLLRAASKWKELLDFEINLINDTHKGITESIYKLLYEEHFS
ALKTFLNMQKRAFLCIFPELRNDEEVQNTYIYSASNSNNNLLDMYKDIEDFKSHFWTLGS
KFNAFFPYPINIDEDMPNLMMSDSEIEEYCKALQYFRNGQNPNKKLLEIIDYITCLSETE
RYDVIKKIREQNLTFEEIKALLKETAVMEVEQLLKNLDVVSKDENKVQNTEHEVRSDILF
DQKYEKKKVEQTKDNDEETCSSASSASSLKSSEKDIVHLNVASKNQQKVLHISGNSQKSS
RKNIERRKIKNVKTRYIPVQTNNIIYNNVDEFGKREKQVNFHKCDLTDSTDRDNLITSTK
HSRTFNSYGDARELSQLSSNPAESFPWISISNSSYDLEEKACSLNQTYSGQESEQILSNS
HSSRMYAQSSRFNRPSQHMKQETNNYSTKAHRLDNDLMNNVYSCETDIDRFLSSLRMQTD
QMHFDIYKSQMFENWAMYDE
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatacattgcacacgatatcaacaaaaaacagaggacaagtgacataaaaata
gaaggaaatgttacattttcacaaatgaaacttcgacgagatattctagatggattaatg
tctgctgggtttcaaaaaccatctccaattcagttgaaagctattcctttaggccgttgt
ggatttgatttaatagtacgtgctaaatcaggaactggaaaaactctagtatttggtatt
attgctcttgaaactttagatatttcaatacatttgccacaaattttaataatagcacct
acaagagaaattgcaattcaaataacccatgttattcaaacaattggttcaaaaatagaa
ggattaaaagttgattactttgtgggaggaatatcaatagaagaagataagaaaaaactg
agcaaatgccatatagctgttggtgcacctgggagaattaaacatttaattgaaaaggga
tttctttctgtttcaaaagttagattgtttgttcttgatgaggccgataaattaatggaa
attaattttcaaacagatatcaaccatatattttctaaactaccatctagtaagcaaatt
atagcttcaagtgctacttatcctggggatttagaaacatttttgcaaacttatatgtct
tctcctgtgttaacatcaccaaatattgatggaccaattttaattggaatcagacagttt
gtgactgtggttccaacacatcctaatgcaatgaaagagctacaaacgaaagttgacgag
ctagtaaaaatttttacaaagatttcattcaagcaaagcctagtttttacaaattatcaa
tcaagagctcaatcagtaagcaataagattaattcgttgggtttttcaacttcatatatt
gctggaaatcaaaatatgactaaaagattggaagcaattgagaatttaagaaatttagaa
catagaattatgttaactacagatttaactgcaagagggatagacatagaaaatgttaat
atggttataaacttggacatacctatggatgttacgacatatttacatagaattggcaga
gctggtcgttatggatcttatggaatttctattacaattatttctgaaagtgaactttca
tcgtttaaaaaattattaacttcgattgatggattaagcttctatttatttaaactcagt
tccgattacacggaagatgtctggagtgatgatatttcaacgttcgaaaaaattgattta
gaatctgaaataaatttaaaaaaatttttaagccttgatgcagcaattgttgaatctgaa
aatggtgaacctattaaaatacctatatcagaacatatagttccttcaaagaataatggt
atatcatcaaaaaacaatgtttctactgcaaatgacgaaaaatctaataacgtttcatct
aagaatacagcaagcagtgatatttcccaaaaagtcagtagtaatactattgcaaaatat
aataaaatgtcaccgaaaagcataccgaccatgttatcatcaaaaaataatgttgaaaac
attaaaataaaatgtgaaaaacagaaattgcggaaaaagaaaaaataccatgaaactatt
tccgatgacgtacctgtaagagcaagatctgttttagataagcagataaaaattagttca
ttacttcaacattacaatcaaggtaaaatagattctacaatcgatgcctctatagaatgt
aaagaaatatcaaatatagaatctgcagttgaaaattttacagactataaagttctaacg
tcatcaaaaaatatatatacgtttacaatgacacctgattcagaaaatccttctgttatg
gaaaagttgaatgaaaatgttgtgtttaaagtagctctatcagatgtagagaactgtaaa
ttattagataccagtgttaaaaaaattatgcagtatatgaaagattcattaattgtagaa
gaagaaaatggtacatcaatctcaaattatgaaaaagaagatgataatgaaaaaacattt
atacaaatttctcagaatactgtttctataaaagatcttgatttaacgcataatttacct
ataaataaattagataatagtgaggatgatcacatacgtataataataaacaattatttg
acaacgtacggcacaaaagttattgaaagtgacaataatgtatgtaatgatgaagaatct
ttgttgagagcggcttcgaaatggaaagaattactggattttgaaattaatttgataaat
gacacacacaaaggcatcaccgaatcaatttataaattattatatgaagaacatttttca
gctctcaaaactttccttaatatgcagaaacgggcttttttgtgtatctttccagaactt
cgtaatgatgaggaagtgcaaaatacttatatatattcagcatctaattctaataataat
ttgttggacatgtacaaagacatagaagatttcaaaagtcatttctggaccttaggatct
aaattcaacgcattttttccatatcctataaatattgatgaagatatgccaaatttaatg
atgtcagattctgagattgaagaatactgcaaggcattacaatattttagaaatggtcaa
aatcctaataaaaaattattagaaataatagattatataacatgtttaagtgaaactgag
agatatgatgtgattaagaaaatcagagaacagaatttaacgtttgaggaaataaaagcg
cttcttaaagaaacagcagtaatggaagttgaacaattgcttaaaaatttggatgtagtc
agtaaagatgagaacaaagtacaaaatacagaacatgaagttcgtagtgatatacttttc
gatcaaaagtacgaaaagaaaaaagttgaacaaacaaaagataatgacgaagaaacttgt
tcaagtgcttctagtgcgtcgtcacttaaatcatctgaaaaagatattgtacatttaaat
gttgcttcgaaaaatcagcagaaagtattacatattagtggcaatagccaaaagtccagt
aggaaaaatattgaacggagaaaaataaaaaatgtaaaaactagatatatacctgtacaa
acaaataatattatttataataatgtggatgaatttggtaaacgtgagaaacaagtaaat
tttcacaaatgtgatttaacagatagcacagatagagataatttaattacttcgacgaaa
cattcaagaacatttaattcatatggagatgcaagagaactatctcaactttcgtcgaat
ccggcggaaagtttcccatggatttcaatttctaattcatcctatgatttagaagaaaaa
gcatgttcattaaaccaaacgtatagtggccaagagagtgaacaaatactttccaattct
cattcttcccgtatgtacgctcaatcatcgcgatttaatcgcccatcgcaacacatgaaa
caggaaactaataattattctacaaaagctcataggctagataatgatttaatgaacaat
gtttattcatgtgaaacggatattgatagatttctatcatcgttgagaatgcaaacagat
cagatgcattttgatatttacaaatcgcaaatgtttgagaattgggctatgtacgatgaa
taa
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